; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G014040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G014040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationCmo_Chr05:10820281..10822539
RNA-Seq ExpressionCmoCh05G014040
SyntenyCmoCh05G014040
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0006457 - protein folding (biological process)
GO:0005832 - chaperonin-containing T-complex (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0051082 - unfolded protein binding (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily
IPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599518.1 Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma subsp. sororia]4.1e-11899.07Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQRG IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI KLPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
        NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        SIPQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

XP_022154764.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Momordica charantia]2.7e-9380Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGD+GH++AMEDDEA+ AEQ   + IYPL NY+FGSKE LLFKNE LADR+ RM SNYAA GLRT V AVLLVELFKHPHLLLL++RNSIFKLPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI
        NESD+DGL+RKLS KLSA G SDASDWE+GECLGMWWRPDFET   P+LSSNVKGAKECTKLFLVKLPE+R+F VPKNLKLIAVPLCQ+ ++ +TYGPVI
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI

Query:  SSIPQLLSKFSFNII
        S +PQLLSKFSFNII
Subjt:  SSIPQLLSKFSFNII

XP_022946691.1 pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita moschata]9.8e-120100Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
        NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        SIPQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

XP_022999530.1 pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita maxima]6.6e-11697.69Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQR  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI +LPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
        NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLV LPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        SIPQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

XP_023545701.1 pre-mRNA cleavage factor Im 25 kDa subunit 1-like [Cucurbita pepo subsp. pepo]7.5e-11294.91Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQR  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI KLPG   R 
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
          +DLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        S+PQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

TrEMBL top hitse value%identityAlignment
A0A0A0LIM0 Pre-mRNA cleavage factor Im 25 kDa subunit3.2e-9277.42Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDG ++A++DD+AS+A Q   IDIYPL NY+FGSKE LLFK+E L+DRV RM SNYAA+GLRT V AV+LVELFKHPHLLL ++RNSIFKLPGGR+RP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI
        NESD+DGL RKL+ KLSA GASDAS WE+ ECLGMWWRPDFET   P+LS+NVKGAKECTKLFLVKLPE+R+F VPKNLKLIAVPLCQI ++H+TYGP+I
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI

Query:  SSIPQLLSKFSFNIIGT
        S IPQLLSKFSFNIIGT
Subjt:  SSIPQLLSKFSFNIIGT

A0A6J1DN47 Pre-mRNA cleavage factor Im 25 kDa subunit1.3e-9380Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGD+GH++AMEDDEA+ AEQ   + IYPL NY+FGSKE LLFKNE LADR+ RM SNYAA GLRT V AVLLVELFKHPHLLLL++RNSIFKLPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI
        NESD+DGL+RKLS KLSA G SDASDWE+GECLGMWWRPDFET   P+LSSNVKGAKECTKLFLVKLPE+R+F VPKNLKLIAVPLCQ+ ++ +TYGPVI
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI

Query:  SSIPQLLSKFSFNII
        S +PQLLSKFSFNII
Subjt:  SSIPQLLSKFSFNII

A0A6J1FHN4 Pre-mRNA cleavage factor Im 25 kDa subunit2.9e-9378.8Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDG ++AMEDDE++AA+Q   IDIYPL NY+FGSKE L+FK++ LADRV RM SNYAAYGLRT V AVLLVELFKHPH+LLL++RNSIF LPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI
        NESD+DGL+RKLS KLSA GA DASDWE+G+CLG WWRPDFET   PHLS+NVKGAKECTKLFLVKLPENR+F VPKNLKLIAVPLCQ+ ++H+ YGPVI
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVI

Query:  SSIPQLLSKFSFNIIGT
        S IPQLLSKFSFNII T
Subjt:  SSIPQLLSKFSFNIIGT

A0A6J1G4C8 Pre-mRNA cleavage factor Im 25 kDa subunit4.8e-120100Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
        NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        SIPQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

A0A6J1KFM8 Pre-mRNA cleavage factor Im 25 kDa subunit3.2e-11697.69Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP
        MGDDGHVNAMEDDEASAAEQR  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSI +LPGGRLRP
Subjt:  MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRP

Query:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
        NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLV LPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS
Subjt:  NESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVIS

Query:  SIPQLLSKFSFNIIGT
        SIPQLLSKFSFNIIGT
Subjt:  SIPQLLSKFSFNIIGT

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 52.9e-4245.55Show/hide
Query:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD
        I++YPL NY FG+KE L  K+ ++A R QRM   +   G+R  V  VL+V   + PH+LLL+L  + FKLPGG L P E +++GL+R ++     +G  D
Subjt:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD

Query:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF
            DW I +C+G WWRP+FE    P++ +++   KE  KLFLV+L E   F VPKN KL+A PL ++  +   YGP+ISS+PQLLS+F+F
Subjt:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 52.9e-4245.55Show/hide
Query:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD
        I++YPL NY FG+KE L  K+ ++A R QRM   +   G+R  V  VL+V   + PH+LLL+L  + FKLPGG L P E +++GL+R ++     +G  D
Subjt:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD

Query:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF
            DW I +C+G WWRP+FE    P++ +++   KE  KLFLV+L E   F VPKN KL+A PL ++  +   YGP+ISS+PQLLS+F+F
Subjt:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF

Q7T3C6 Cleavage and polyadenylation specificity factor subunit 52.2e-4245.55Show/hide
Query:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD
        I++YPL NY FG+KE L  K+ ++A R QRM   +   G+R  V  VL+V   + PH+LLL+L  + FKLPGG L P E +++GL+R ++     +G  D
Subjt:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD

Query:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF
            DW I +C+G WWRP+FE    P++ +++   KE  KLFLV+L E   F VPKN KL+A PL ++  +   YGP+ISS+PQLLS+F+F
Subjt:  A--SDWEIGECLGMWWRPDFETFD-PHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 21.1e-5250.52Show/hide
Query:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD
        ++ YPL NY FG+KE  L K+ ++ADR+ RM  NY   G+RT V  +LLV+   HPH+LLL++ N+  KLPGGRL+P E++ DGL+RKL+SKL    A+ 
Subjt:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD

Query:  ASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
          DW +GEC+  WWRP+FET   P+   ++   KEC +L++V L E   F VPKNLKL+AVPL ++  + + YGPVIS+IPQ LS+F FN+I +
Subjt:  ASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT

Q94AF0 Pre-mRNA cleavage factor Im 25 kDa subunit 12.0e-7059.73Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGD------IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLP
        MG++     ME+   +   +R D      +D+YPL +Y+FGSKEAL  K+E ++DRV R+ SNYAA+GLRT V AVLLVELFKHPH+LLL+ RNSIFKLP
Subjt:  MGDDGHVNAMEDDEASAAEQRGD------IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLP

Query:  GGRLRPNESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHE
        GGRLRP ESD++GL+RKL+SKLS       S +E+GEC+GMWWRP+FET   P L  N+K  KECTKLFLV+LP +++F VPKN KL+AVPLCQ+ ++ +
Subjt:  GGRLRPNESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHE

Query:  TYGPVISSIPQLLSKFSFNII
        TYGP++S IP+LLSKFSFN++
Subjt:  TYGPVISSIPQLLSKFSFNII

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit7.6e-5450.52Show/hide
Query:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD
        ++ YPL NY FG+KE  L K+ ++ADR+ RM  NY   G+RT V  +LLV+   HPH+LLL++ N+  KLPGGRL+P E++ DGL+RKL+SKL    A+ 
Subjt:  IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRRKLSSKLSAIGASD

Query:  ASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT
          DW +GEC+  WWRP+FET   P+   ++   KEC +L++V L E   F VPKNLKL+AVPL ++  + + YGPVIS+IPQ LS+F FN+I +
Subjt:  ASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT

AT4G29820.1 homolog of CFIM-251.4e-7159.73Show/hide
Query:  MGDDGHVNAMEDDEASAAEQRGD------IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLP
        MG++     ME+   +   +R D      +D+YPL +Y+FGSKEAL  K+E ++DRV R+ SNYAA+GLRT V AVLLVELFKHPH+LLL+ RNSIFKLP
Subjt:  MGDDGHVNAMEDDEASAAEQRGD------IDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLP

Query:  GGRLRPNESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHE
        GGRLRP ESD++GL+RKL+SKLS       S +E+GEC+GMWWRP+FET   P L  N+K  KECTKLFLV+LP +++F VPKN KL+AVPLCQ+ ++ +
Subjt:  GGRLRPNESDLDGLRRKLSSKLSAIGASDASDWEIGECLGMWWRPDFET-FDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHE

Query:  TYGPVISSIPQLLSKFSFNII
        TYGP++S IP+LLSKFSFN++
Subjt:  TYGPVISSIPQLLSKFSFNII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACGACGGACATGTAAATGCTATGGAGGACGATGAAGCTTCTGCCGCCGAGCAACGCGGAGACATCGACATTTACCCTCTCAGAAACTACTTCTTTGGATCCAA
AGAGGCTCTGCTTTTCAAGAACGAGGCCTTGGCTGATCGCGTCCAGAGGATGAATTCCAACTATGCCGCTTACGGATTGAGAACTTATGTCGGAGCAGTTTTGCTGGTTG
AACTATTTAAACATCCTCATTTGTTGCTATTGCGATTACGAAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCTAATGAATCAGATCTTGATGGTCTGAGACGA
AAGCTGTCAAGCAAGCTATCTGCCATTGGAGCCTCTGATGCATCTGATTGGGAGATCGGCGAGTGCCTTGGGATGTGGTGGAGGCCTGACTTTGAAACCTTTGATCCACA
CTTGTCCAGTAATGTAAAAGGCGCCAAGGAGTGCACTAAACTCTTCCTGGTCAAGCTGCCGGAGAATCGAGAATTCTTCGTGCCAAAGAACCTCAAGTTGATAGCAGTTC
CTTTATGCCAGATTCAAAAAAGCCATGAGACGTACGGGCCAGTCATATCGAGCATTCCACAGCTGCTTTCTAAGTTCTCCTTCAACATCATTGGAACCTAA
mRNA sequenceShow/hide mRNA sequence
TCCACTCTCTGCAACCACACGCCATCTTCAAACATCCAGACCTATATTCTCTACTCCCACTCACTTTCCTCCTCTCTCTCCTCTCCATATTCGATTCTCTCTATCTCTCT
CTGTTTTTCTGCAATCGGCCATGGGAGACGACGGACATGTAAATGCTATGGAGGACGATGAAGCTTCTGCCGCCGAGCAACGCGGAGACATCGACATTTACCCTCTCAGA
AACTACTTCTTTGGATCCAAAGAGGCTCTGCTTTTCAAGAACGAGGCCTTGGCTGATCGCGTCCAGAGGATGAATTCCAACTATGCCGCTTACGGATTGAGAACTTATGT
CGGAGCAGTTTTGCTGGTTGAACTATTTAAACATCCTCATTTGTTGCTATTGCGATTACGAAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCTAATGAATCAG
ATCTTGATGGTCTGAGACGAAAGCTGTCAAGCAAGCTATCTGCCATTGGAGCCTCTGATGCATCTGATTGGGAGATCGGCGAGTGCCTTGGGATGTGGTGGAGGCCTGAC
TTTGAAACCTTTGATCCACACTTGTCCAGTAATGTAAAAGGCGCCAAGGAGTGCACTAAACTCTTCCTGGTCAAGCTGCCGGAGAATCGAGAATTCTTCGTGCCAAAGAA
CCTCAAGTTGATAGCAGTTCCTTTATGCCAGATTCAAAAAAGCCATGAGACGTACGGGCCAGTCATATCGAGCATTCCACAGCTGCTTTCTAAGTTCTCCTTCAACATCA
TTGGAACCTAAGAATATTTATGAGTGCATTATAGAGGCGTGAGGTAAGTTTGTATGAATGTTTGAGAGATCCTTTTTAAAACATGCACATAGACGATGGTGATGGTTTTG
TTAAGCATAAAGATAACAGTCATATAGTTCCCACATTGTTACTTCACAACTTGAGTTCTAAGGAATGCTAAAACTAGACGATTGCTTAAATTGCCAATTCTTGACTTTCT
TATGCTTTGTTAAATGTGGCAAATATTTATGTGATCCTTATCCCATGAAAATACTTGTCGG
Protein sequenceShow/hide protein sequence
MGDDGHVNAMEDDEASAAEQRGDIDIYPLRNYFFGSKEALLFKNEALADRVQRMNSNYAAYGLRTYVGAVLLVELFKHPHLLLLRLRNSIFKLPGGRLRPNESDLDGLRR
KLSSKLSAIGASDASDWEIGECLGMWWRPDFETFDPHLSSNVKGAKECTKLFLVKLPENREFFVPKNLKLIAVPLCQIQKSHETYGPVISSIPQLLSKFSFNIIGT