; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G014050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G014050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L18ae family
Genome locationCmo_Chr05:10824862..10827317
RNA-Seq ExpressionCmoCh05G014050
SyntenyCmoCh05G014050
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599519.1 60S ribosomal protein L18a-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-6899.25Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQ KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]1.1e-68100Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_022999414.1 uncharacterized protein LOC111493795 [Cucurbita maxima]9.2e-6898.51Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRP+ARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAV LL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_023547144.1 uncharacterized protein LOC111806040 [Cucurbita pepo subsp. pepo]1.2e-6798.51Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVK VSDRHLDLLRPSARICSIFKGQGKD+SDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]2.8e-6493.23Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN KID TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILLVVVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

TrEMBL top hitse value%identityAlignment
A0A0A0LKM2 Uncharacterized protein1.3e-6288.72Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS++LL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A1S3CAZ9 uncharacterized protein LOC1034986581.5e-6390.98Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A5D3CGZ6 60S ribosomal protein L18a-11.5e-6390.98Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL
        +RRDPRERAGLAAS+IAALACS+ILL+VVAV L
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRL

A0A6J1G4J6 uncharacterized protein LOC1114506865.3e-69100Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

A0A6J1KAT7 uncharacterized protein LOC1114937954.5e-6898.51Show/hide
Query:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
        MDPNAKIDPTVQLVKSVSDRHLDLLRP+ARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN
Subjt:  MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN

Query:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL
        SRRDPRERAGLAASSIAALACSVILLVVVAV LL
Subjt:  SRRDPRERAGLAASSIAALACSVILLVVVAVRLL

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein2.6e-0442.65Show/hide
Query:  LYDKPLPCFGCGIGWFSFLLGFLF-PVMWYYATILYFWNSRRDPRERAGLAASSIAALACSVILLVVV
        + +  LPC G G+GWF F++GFLF  + WY    +    S  D RE+AG  A SIA    SV+ L+ V
Subjt:  LYDKPLPCFGCGIGWFSFLLGFLF-PVMWYYATILYFWNSRRDPRERAGLAASSIAALACSVILLVVV

Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family9.6e-2363.22Show/hide
Query:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV
        + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAAS+IAAL  SV L++ V V
Subjt:  RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV

AT1G54217.2 Ribosomal protein L18ae family3.3e-2360.22Show/hide
Query:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV
        D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAAS+IAAL  SV L++ V V
Subjt:  DASDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAV

AT4G26060.1 Ribosomal protein L18ae family1.7e-3559.35Show/hide
Query:  DPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPR
        D + +LVKSV+D+H  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPR
Subjt:  DPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPR

Query:  ERAGLAASSIAALACSVILLVVV
        ERAGLAAS+I A+  S++LLV+V
Subjt:  ERAGLAASSIAALACSVILLVVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown4.9e-3554.41Show/hide
Query:  MDPNAKI---DPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY
        MD N+K    +   +LVK ++DRH  L++ ++R  S      KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LY
Subjt:  MDPNAKI---DPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILY

Query:  FWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR
        F N  R+DPRERAGLAAS+I A+  S++LLV+ A R
Subjt:  FWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)2.1e-3064.89Show/hide
Query:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR
        KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAAS+I A+  S++LLV+ A R
Subjt:  KDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWN-SRRDPRERAGLAASSIAALACSVILLVVVAVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAATGCAAAAATTGATCCGACTGTGCAACTGGTGAAATCGGTCTCTGATAGACATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATCTTCAAAGG
CCAAGGAAAAGATGCTTCAGACCATATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTGTACGACAAGCCTCTTCCGTGTTTTGGCTGTG
GCATAGGATGGTTTTCCTTCCTCCTTGGGTTTTTGTTCCCAGTAATGTGGTACTATGCCACGATTCTGTACTTCTGGAATTCTCGTCGAGATCCAAGGGAACGAGCTGGA
TTAGCTGCGTCCTCCATTGCTGCACTTGCATGTTCGGTCATCTTGTTAGTTGTCGTAGCTGTTCGCTTATTATAG
mRNA sequenceShow/hide mRNA sequence
TCGGCGTTTAGCTGATGAGAGATGAAGTTGATCGTTGCTTGACGTTTAAATTTCTTGTCAGTTGAGGAAAAGCGTGTTCGTTTTTTCACTCATCCGCCAATTCCATCTCT
GATCATTGGAAACCCGGAGAAATTGCAGTTTCAGTGGATTCCATCCGCCCACCTCTTCATCTTTTCGGGTTTAGAAAGTGGATTCTGCGAACTTGAAGAGTTCATCCTTC
CATAAACACCAGCTTCAACATGGATCCAAATGCAAAAATTGATCCGACTGTGCAACTGGTGAAATCGGTCTCTGATAGACATCTTGATCTTTTGAGGCCATCTGCCCGAA
TTTGTTCAATCTTCAAAGGCCAAGGAAAAGATGCTTCAGACCATATAAGGAGCAAGTACACACTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTGTACGACAAGCCT
CTTCCGTGTTTTGGCTGTGGCATAGGATGGTTTTCCTTCCTCCTTGGGTTTTTGTTCCCAGTAATGTGGTACTATGCCACGATTCTGTACTTCTGGAATTCTCGTCGAGA
TCCAAGGGAACGAGCTGGATTAGCTGCGTCCTCCATTGCTGCACTTGCATGTTCGGTCATCTTGTTAGTTGTCGTAGCTGTTCGCTTATTATAG
Protein sequenceShow/hide protein sequence
MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAG
LAASSIAALACSVILLVVVAVRLL