; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G000220 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G000220
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationCmo_Chr06:145392..145778
RNA-Seq ExpressionCmoCh06G000220
SyntenyCmoCh06G000220
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596170.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.3e-5091.45Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQ-DDDDDEQLLLHWAAM
        MESSLVGR+VEE RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASV+TPETNVRKIQ DDDDDEQLLLHWAAM
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQ-DDDDDEQLLLHWAAM

Query:  EDSSDGFLGGSYESSEG
        EDSSDGFLGG +    G
Subjt:  EDSSDGFLGGSYESSEG

KAG7027710.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5192.24Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGR+VEE RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASV+TPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGSYESSEG
        DSSDGFLGG +    G
Subjt:  DSSDGFLGGSYESSEG

XP_022147780.1 sigma factor binding protein 2, chloroplastic-like [Momordica charantia]5.8e-1952.38Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVQTPETNVRKIQDDDDDEQLLLHWA-
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVQTPETNVRKIQDDDDDEQLLLHWA-

Query:  AMEDSSDGFLGGSYESSEGIFMRDMV
         MEDS+D FL   YES E + MR+M+
Subjt:  AMEDSSDGFLGGSYESSEGIFMRDMV

XP_022941301.1 uncharacterized protein LOC111446639 [Cucurbita moschata]2.9e-63100Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGSYESSEGIFMRDMVDKLAA
        DSSDGFLGGSYESSEGIFMRDMVDKLAA
Subjt:  DSSDGFLGGSYESSEGIFMRDMVDKLAA

XP_023539403.1 uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]1.2e-5389.39Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQ--DDDDDEQLLLHWAA
        MESSLVGRDVEEGRKERRR RKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQ+LTGQDAPKFPP   SASV+TPETNVRKIQ  DDDDD+QLLLHWAA
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQ--DDDDDEQLLLHWAA

Query:  --MEDSSDGFLGGSYESSEGIFMRDMVDKLAA
          MEDSSD FLGGSYES EGIFMRDMVD+LAA
Subjt:  --MEDSSDGFLGGSYESSEGIFMRDMVDKLAA

TrEMBL top hitse value%identityAlignment
A0A0A0LFH5 VQ domain-containing protein4.6e-1447.5Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKI---QDDDDDEQLLLHWAAMEDSS--DGFLG
        R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P ASS  +   +   +K+   + ++D+++LL+      DSS  D FL 
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKI---QDDDDDEQLLLHWAAMEDSS--DGFLG

Query:  GSYESSEGIFMRDMVDKLAA
         SYES E I  RD+++   A
Subjt:  GSYESSEGIFMRDMVDKLAA

A0A1S3B8H6 uncharacterized protein LOC1034871673.5e-1445.9Show/hide
Query:  RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSS--DGF
        +K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++    +   E  V   Q +DD+++LL+      DSS  D F
Subjt:  RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSS--DGF

Query:  LGGSYESSEGIFMRDMVDKLAA
           S+ES E I  RD+++   A
Subjt:  LGGSYESSEGIFMRDMVDKLAA

A0A5D3DPQ4 Sigma factor binding protein 23.5e-1445.9Show/hide
Query:  RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSS--DGF
        +K+  R RK C+   QPLKVVYISNPMRV  SA+EFR LVQELTG+DA      KF P++    +   E  V   Q +DD+++LL+      DSS  D F
Subjt:  RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA-----PKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSS--DGF

Query:  LGGSYESSEGIFMRDMVDKLAA
           S+ES E I  RD+++   A
Subjt:  LGGSYESSEGIFMRDMVDKLAA

A0A6J1D137 sigma factor binding protein 2, chloroplastic-like2.8e-1952.38Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVQTPETNVRKIQDDDDDEQLLLHWA-
        M+ +L+  ++E  +KE R+ RK   +KNQPLKVVYISNPMRV  SA+EFR LVQELTG+DA +FP  A    AS+   E N+ K ++ DDDE+  L  A 
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSAS--SASVQTPETNVRKIQDDDDDEQLLLHWA-

Query:  AMEDSSDGFLGGSYESSEGIFMRDMV
         MEDS+D FL   YES E + MR+M+
Subjt:  AMEDSSDGFLGGSYESSEGIFMRDMV

A0A6J1FKR4 uncharacterized protein LOC1114466391.4e-63100Show/hide
Query:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME
        MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME
Subjt:  MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAME

Query:  DSSDGFLGGSYESSEGIFMRDMVDKLAA
        DSSDGFLGGSYESSEGIFMRDMVDKLAA
Subjt:  DSSDGFLGGSYESSEGIFMRDMVDKLAA

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic5.3e-0750Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASS
        + ++     ++P+KV YISNPMRV+   ++FR LVQELTGQDA   PPS ++
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASS

Q9LDH1 Sigma factor binding protein 1, chloroplastic3.7e-0847.06Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVQTPETNV
        + +K     N+P+KV YISNPMRVQ  A++FR LVQELTGQDA      P + PS+   ++  P  N+
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVQTPETNV

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.8e-0850Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASS
        + ++     ++P+KV YISNPMRV+   ++FR LVQELTGQDA   PPS ++
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASS

AT3G56710.1 sigma factor binding protein 12.6e-0947.06Show/hide
Query:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVQTPETNV
        + +K     N+P+KV YISNPMRVQ  A++FR LVQELTGQDA      P + PS+   ++  P  N+
Subjt:  RNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDA------PKFPPSASSASVQTPETNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCGAGTTTAGTTGGGAGGGACGTGGAAGAGGGGAGGAAAGAAAGGAGAAGGAACAGGAAACCCTGTGATCGGAAGAACCAACCTCTCAAAGTTGTGTACATATC
CAACCCCATGAGGGTTCAAGCCAGTGCGGCTGAGTTTAGAGGCCTGGTTCAAGAACTCACCGGCCAAGATGCGCCCAAGTTTCCTCCTTCCGCCTCCTCGGCCTCCGTCC
AGACTCCGGAGACTAATGTTCGAAAGATACAAGACGACGACGACGACGAACAACTCTTACTTCACTGGGCTGCAATGGAGGATTCCAGTGATGGTTTTCTTGGGGGTTCG
TATGAGAGCTCGGAGGGTATTTTCATGAGGGATATGGTGGACAAATTGGCGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCGAGTTTAGTTGGGAGGGACGTGGAAGAGGGGAGGAAAGAAAGGAGAAGGAACAGGAAACCCTGTGATCGGAAGAACCAACCTCTCAAAGTTGTGTACATATC
CAACCCCATGAGGGTTCAAGCCAGTGCGGCTGAGTTTAGAGGCCTGGTTCAAGAACTCACCGGCCAAGATGCGCCCAAGTTTCCTCCTTCCGCCTCCTCGGCCTCCGTCC
AGACTCCGGAGACTAATGTTCGAAAGATACAAGACGACGACGACGACGAACAACTCTTACTTCACTGGGCTGCAATGGAGGATTCCAGTGATGGTTTTCTTGGGGGTTCG
TATGAGAGCTCGGAGGGTATTTTCATGAGGGATATGGTGGACAAATTGGCGGCTTGA
Protein sequenceShow/hide protein sequence
MESSLVGRDVEEGRKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPSASSASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSSDGFLGGS
YESSEGIFMRDMVDKLAA