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CmoCh06G001130 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G001130
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionla-related protein 1B-like
Genome locationCmo_Chr06:646866..648211
RNA-Seq ExpressionCmoCh06G001130
SyntenyCmoCh06G001130
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR006630 - La-type HTH domain
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3445317.1 hypothetical protein FNV43_RR10492 [Rhamnella rubrinervis]3.5e-0557.45Show/hide
Query:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        +LR +MD HGWV I+LIA+FPR++ LT++I+ IL  LR SSV+EV +
Subjt:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
KAG7587200.1 La-type HTH domain, partial [Arabidopsis thaliana x Arabidopsis arenosa]2.7e-0553.19Show/hide
Query:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        +LR  MD HGWV+I +IA FPR++ +TNDI FIL  +R S+ +E+ N
Subjt:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
XP_021999750.1 la-related protein 1C [Helianthus annuus]7.1e-0659.57Show/hide
Query:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        +LR HMD+ GWVSITLIA FP+++ LTNDI+ +L VLR SS  E+ +
Subjt:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
XP_022145446.1 la-related protein 1B-like [Momordica charantia]1.7e-0765.38Show/hide
Query:  RHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        RH+ T L++HMD  GWV I LIATF RMR LTNDI +ILF L GSSV+EV +
Subjt:  RHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
XP_031739211.1 la-related protein 1C-like [Cucumis sativus]1.2e-0845.74Show/hide
Query:  FIPPIQFSHPLTPQPVWNKSDFYLWIIIFVHITCIIFHDQRRFHRHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
        ++PP+    P   QP +       W II  +     F D+  F     T L+R+MD HGWV ITLIA+FPR+++LTNDI FILF L+GSS +EV
Subjt:  FIPPIQFSHPLTPQPVWNKSDFYLWIIIFVHITCIIFHDQRRFHRHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
TrEMBL top hitse value%identityAlignment
A0A0D6QXI2 HTH La-type RNA-binding domain-containing protein1.3e-0559.57Show/hide
Query:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        +LR HMD  GWV I++IA F R+R +T +I FIL VLRGS+V+EV N
Subjt:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
A0A158QE67 HTH La-type RNA-binding domain-containing protein2.9e-0558.7Show/hide
Query:  THLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
        T LR+HMDK GWV +T+IA F RMR LTND+ +I+  L  S V+EV
Subjt:  THLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
A0A251SNH3 Putative winged helix-turn-helix DNA-binding domain-containing protein3.4e-0659.57Show/hide
Query:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        +LR HMD+ GWVSITLIA FP+++ LTNDI+ +L VLR SS  E+ +
Subjt:  HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
A0A6J1CWB8 la-related protein 1B-like8.1e-0865.38Show/hide
Query:  RHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
        RH+ T L++HMD  GWV I LIATF RMR LTNDI +ILF L GSSV+EV +
Subjt:  RHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVSN
G7J5C2 LA-related protein 6 LA RNA-binding domain protein2.9e-0555.1Show/hide
Query:  NYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVS
        N   L+ +MD+HGWV ++LIA FPR++ LTN+I  IL  LR SSV+EV+
Subjt:  NYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEVS
SwissProt top hitse value%identityAlignment
Q6PKG0 La-related protein 19.0e-0450Show/hide
Query:  LRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
        LRR MD  G++ ITLIA+F R++ LT DI  I   L+ S V+E+
Subjt:  LRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
Q8RWR2 La-related protein 1B3.1e-0434.04Show/hide
Query:  HPLTPQPVWNKSDFYLWIIIFVHITCIIFHD-----QRRFHRHNYT---HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
        HP +P P+     F L  + F +   I+++      +  F   N +   HLR  M+  GWV + +IA F R+  LTN+I+ IL  LR S V+E+
Subjt:  HPLTPQPVWNKSDFYLWIIIFVHITCIIFHD-----QRRFHRHNYT---HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
Arabidopsis top hitse value%identityAlignment
AT5G66100.1 winged-helix DNA-binding transcription factor family protein2.2e-0534.04Show/hide
Query:  HPLTPQPVWNKSDFYLWIIIFVHITCIIFHD-----QRRFHRHNYT---HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV
        HP +P P+     F L  + F +   I+++      +  F   N +   HLR  M+  GWV + +IA F R+  LTN+I+ IL  LR S V+E+
Subjt:  HPLTPQPVWNKSDFYLWIIIFVHITCIIFHD-----QRRFHRHNYT---HLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRGSSVIEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTGTCTAATGAAGTTGATGCTGCCACTACACCTCGATCTTTCAGTACTACATCTCGATCTTTCATACCACCGATTCAATTTAGTCACCCTTTGACTCCTCAACC
AGTTTGGAACAAATCAGATTTTTACTTATGGATTATTATATTTGTTCACATCACATGTATAATCTTTCACGATCAGCGCCGCTTCCACCGCCACAATTACACTCATTTGA
GGAGGCATATGGACAAGCATGGATGGGTTTCTATTACATTAATAGCTACCTTTCCAAGGATGCGGCGGCTAACCAATGATATTAGATTTATTTTATTTGTATTACGCGGT
TCGAGTGTTATTGAAGTATCGAATTTTGTCTGTTTCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGTCTAATGAAGTTGATGCTGCCACTACACCTCGATCTTTCAGTACTACATCTCGATCTTTCATACCACCGATTCAATTTAGTCACCCTTTGACTCCTCAACC
AGTTTGGAACAAATCAGATTTTTACTTATGGATTATTATATTTGTTCACATCACATGTATAATCTTTCACGATCAGCGCCGCTTCCACCGCCACAATTACACTCATTTGA
GGAGGCATATGGACAAGCATGGATGGGTTTCTATTACATTAATAGCTACCTTTCCAAGGATGCGGCGGCTAACCAATGATATTAGATTTATTTTATTTGTATTACGCGGT
TCGAGTGTTATTGAAGTATCGAATTTTGTCTGTTTCGGCTAG
Protein sequenceShow/hide protein sequence
MELSNEVDAATTPRSFSTTSRSFIPPIQFSHPLTPQPVWNKSDFYLWIIIFVHITCIIFHDQRRFHRHNYTHLRRHMDKHGWVSITLIATFPRMRRLTNDIRFILFVLRG
SSVIEVSNFVCFG