; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G001830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G001830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L35
Genome locationCmo_Chr06:1000809..1002993
RNA-Seq ExpressionCmoCh06G001830
SyntenyCmoCh06G001830
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650972.1 hypothetical protein Csa_002588 [Cucumis sativus]4.6e-3651.56Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MA+GHRRS+KI+V AK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKS SRIL+Q+ RTLKSR++SFVKKH   RRSK          +   E++Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELLDLEQF
        +SW +   E  C A FGVGLGY++        +    I PS SS + V L +FVL   K K+LWAML+ +    LLL ++D F+ LL L QF
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELLDLEQF

KAG6596309.1 hypothetical protein SDJN03_09489, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9497.91Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDET+Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW
        QSWRLSRAESSCAAVFGVGLGYLLAEFGASATV+RVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAML+AVLSLLLLEIDRFLEL+DLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW

KAG7027863.1 hypothetical protein SDJN02_09040 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-9598.95Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDET+Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW
        QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLEL+DLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW

XP_023540743.1 uncharacterized protein LOC111801019 [Cucurbita pepo subsp. pepo]5.3e-9396.34Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MALGHRRSWKITVHAKVN+LYIKFKATVKRPSGKFRSLLNLDKLL GLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDET+Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW
        QSWRL RAESSCAAVFGVGLGYLLAEFGASA VKRVGIIPSLSSFLLVC+VLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLEL+DLEQFW
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW

XP_038906422.1 uncharacterized protein LOC120092221 [Benincasa hispida]1.0e-3554.77Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MALG RRS+KITVHAK+ NLYIK KAT+K PSGK + LL LDKLL G DSKSES ILVQ+ RTLKSR++SFVKKH    RS      KMP      E++ 
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLA---EFGASATVKRVGIIPSLSS--FLLVCLVLFVLLFHKSK--FLWAM--LMAVLSLLLLEIDRFLELLDLEQF
        QSW + R E  C A FGVGLGYLLA     G +  +      PS SS  ++ +CL+LFVL  HK K  +LWA+  L+A+L L LL++D+F+ LL L  F
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLA---EFGASATVKRVGIIPSLSS--FLLVCLVLFVLLFHKSK--FLWAM--LMAVLSLLLLEIDRFLELLDLEQF

TrEMBL top hitse value%identityAlignment
A0A0A0LCL9 50S ribosomal protein L351.7e-2852.67Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MA+GHRRS+KI+V AK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKS SRIL+Q+ RTLKSR++SFVKKH   RRSK          +   E++Y
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCL
        +SW +   E  C A FGVGLGY++        +    I PS SS + V L
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCL

A0A1R3KWS9 Uncharacterized protein (Fragment)2.2e-0439.58Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGK---FRSLLNLDKLLAGLDSKSESRILV--QQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPD
        M +G +R WK ++ AK      K KAT   P+ K   F  LL L+K +  L  KS S I V  QQ RTLKSR + F++K  R RR++  +  + P+
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGK---FRSLLNLDKLLAGLDSKSESRILV--QQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPD

A0A1S3B4Y8 uncharacterized protein LOC1034862293.9e-3351.3Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MA+GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E+KY
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELLDLEQFW
        QSW +           GVG GYL+A          VG   S SS + V L +FV+   K K+LWA+L+ V    LLL ++D F+ LL L  F+
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAV--LSLLLLEIDRFLELLDLEQFW

A0A5A7TM08 RING-H2 finger protein ATL74-like4.6e-2658.4Show/hide
Query:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY
        MA+GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E+KY
Subjt:  MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKY

Query:  QSWRLSRAESSCAAVFGVGLGYLLA
        Q W +           GVG GYL+A
Subjt:  QSWRLSRAESSCAAVFGVGLGYLLA

A0A5D3DNQ2 50S ribosomal protein L351.8e-2559.02Show/hide
Query:  GHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKYQSW
        GHRRS+KI+VHAK+ NLYIK KAT+K PSGKF+ LL LDKLL  +DSKSESR+LVQ+ RTLKSR++SFVKKH  R RSK         P+   E+KYQSW
Subjt:  GHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKYQSW

Query:  RLSRAESSCAAVFGVGLGYLLA
         +           GVG GYL+A
Subjt:  RLSRAESSCAAVFGVGLGYLLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTTAGGTCACCGGCGGTCATGGAAAATCACGGTACATGCGAAGGTGAACAACCTTTATATCAAGTTCAAGGCCACCGTGAAACGTCCGTCGGGAAAATTCCGAAG
CCTTCTTAATCTGGATAAATTACTCGCCGGACTGGATTCCAAATCGGAGTCTCGGATCCTCGTTCAACAGCATCGGACTTTGAAATCCCGAATTATCAGCTTCGTAAAGA
AACATTTCCGGCGTCGCCGATCAAAAACCGGTGTTGGCTTCAAAATGCCGGATCCATACCTAGTCGATGAAACTAAATATCAATCTTGGCGTTTGAGCCGCGCGGAATCA
AGTTGCGCGGCTGTTTTTGGTGTCGGATTGGGTTATTTGCTTGCGGAATTTGGCGCCAGCGCCACAGTGAAGAGAGTCGGTATCATTCCTAGCTTGAGTTCCTTTTTACT
TGTGTGCCTTGTTTTATTTGTTTTATTGTTCCACAAATCCAAGTTCCTTTGGGCAATGCTAATGGCTGTGCTTTCTCTTTTACTGCTAGAAATTGACAGATTTCTGGAAC
TGCTAGATTTAGAGCAATTTTGGTAA
mRNA sequenceShow/hide mRNA sequence
AATTCCCACAAAATCCCAATCTTAGATATTAATTAAAGCTCTGAACTGCCCACTGATTTTGGAACTCAATAAAAAAGATAAACCTCAAACCATCATTCCATCACCTCCTT
CCTTTATCTTTACCTTCAAAAATTCCTCCACACCCGTGAAGTTATGGACCCAAATTTGCCACGCCGGCTTCTGGCCACTGAGCCAGTGCCGGGGAACACCACGGCTAATT
CCTCGTATTATGTCGGGGAGATGAACCTCGACGCTCACATGGTGGTGATTCTGGCGGCGCTCTTATTTGCACTAATTGGAGCTCTTGGTGTTAACTCTCTTGTACGCTGC
GTTTTGAGCCTCGGCTTCCGGTTTCGAGAGAGGCCGGAGGAGACGGCGGCGCGTTTGGCGGCGATTGGGCTTAAGAAGCGAGAACTTAGTCAGATTCCGGTTGGGGTTTA
TGGAAGTGATTGTGCGAAAATTAAGGGTACGGATTGCGCGATTTGCCTTGGGGAGTTTGAAGTGGGCGACAAGGTTAGAATGTTGCCTAATTGTAACCATGGATTCCACG
TCAGATGTATTGACACGTGGCTGTTATCTCACTCCTCTTGCCCCAACTGTCGCCATTCGTTGCTGCTGCCACCGGTTAAAGGGAAACGAGACGGCGCTACTGTTTCGCCG
CCGCAACCGCCGCCGCAGGGCTCTGCTTCAAGCCACGTCGTTGTGGTCGTAGAGGGCGGTGGCAATTAGCTAAGCCACGGACTGTTCTGATATTTCCTCGTGGAAGTGGC
AGTGGCAGTGGCTGTGTCGTTGCAATGGCGTTAGGTCACCGGCGGTCATGGAAAATCACGGTACATGCGAAGGTGAACAACCTTTATATCAAGTTCAAGGCCACCGTGAA
ACGTCCGTCGGGAAAATTCCGAAGCCTTCTTAATCTGGATAAATTACTCGCCGGACTGGATTCCAAATCGGAGTCTCGGATCCTCGTTCAACAGCATCGGACTTTGAAAT
CCCGAATTATCAGCTTCGTAAAGAAACATTTCCGGCGTCGCCGATCAAAAACCGGTGTTGGCTTCAAAATGCCGGATCCATACCTAGTCGATGAAACTAAATATCAATCT
TGGCGTTTGAGCCGCGCGGAATCAAGTTGCGCGGCTGTTTTTGGTGTCGGATTGGGTTATTTGCTTGCGGAATTTGGCGCCAGCGCCACAGTGAAGAGAGTCGGTATCAT
TCCTAGCTTGAGTTCCTTTTTACTTGTGTGCCTTGTTTTATTTGTTTTATTGTTCCACAAATCCAAGTTCCTTTGGGCAATGCTAATGGCTGTGCTTTCTCTTTTACTGC
TAGAAATTGACAGATTTCTGGAACTGCTAGATTTAGAGCAATTTTGGTAAAACATTTTTTTTTTGTTCTTTCTTCCTCTTCTCAGATCTTCGTTTTTTTACAAATAAACA
TATAATTATAAATATAAGTTTGGGAATTATTCGATTTCTTCTTCTTGTTTTCTATTTTATGCTGTTCTTGTTGATACTGTACCACCAAAACTTTAAGCTAC
Protein sequenceShow/hide protein sequence
MALGHRRSWKITVHAKVNNLYIKFKATVKRPSGKFRSLLNLDKLLAGLDSKSESRILVQQHRTLKSRIISFVKKHFRRRRSKTGVGFKMPDPYLVDETKYQSWRLSRAES
SCAAVFGVGLGYLLAEFGASATVKRVGIIPSLSSFLLVCLVLFVLLFHKSKFLWAMLMAVLSLLLLEIDRFLELLDLEQFW