CuGenDBv2

Gene ID	CmoCh06G001880
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	Cmo_Chr06:1018857..1025755
RNA-Seq Expression	CmoCh06G001880
Synteny	CmoCh06G001880
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6596313.1 hypothetical protein SDJN03_09493, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-121

99.08

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLL FILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

3.1e-113

91.28

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILS+YILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022933336.1 uncharacterized protein LOC111440559 [Cucurbita moschata]

1.6e-122

100

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_022971506.1 uncharacterized protein LOC111470204 [Cucurbita maxima]

1.4e-121

99.08

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+LTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

XP_023541018.1 uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo]

8.1e-122

99.54

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

1.5e-113

91.28

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M +PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY+D+HPHIS+QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILS+YILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

7.4e-113

91.74

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILSIYILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

7.4e-113

91.74

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        M  PP L LL+SL SL+P  LAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        A+VPMIDVHLRYSGSDLHGVTAKV+DMPHIY D+HPHI++QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL L+FILSIYILQSSK+KLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1EYS2 uncharacterized protein LOC111440559

7.9e-123

100

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

A0A6J1I3H9 uncharacterized protein LOC111470204

6.7e-122

99.08

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Query:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
        MGEPPFLLLLVSLFSLIP FLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS
Subjt:  MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKS

Query:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV
        AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL+LTFILSIYILQSSKEKLARFV
Subjt:  AQVPMIDVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFV

Query:  RETVVESSIPGVGVAKVE
        RETVVESSIPGVGVAKVE
Subjt:  RETVVESSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

3.9e-90

75.36

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Query:  LLLVSL-FSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMI
        L+L+SL F  + +  AYRPGDIV MSKMGQYHSSRT WHD+IG+HCPIF VNREVL+PI KP+GYTG DPYKI FQVG EKFL+ WLLVINRKS++VPMI
Subjt:  LLLVSL-FSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMI

Query:  DVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRETVVE
        DV+LRYSG DL GVTA+V+DMPH YL++HP I +QFWD QHWPKH+LVRYTW+EQSEIDV+SG YVLFGS L  +F+LSIY+LQSS+EKLARFVRETVVE
Subjt:  DVHLRYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRETVVE

Query:  SSIPGVG
        SS   VG
Subjt:  SSIPGVG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAGAACCTCCATTTCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGAATTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTA
TCACTCGTCGAGAACAGTTTGGCACGATATGATTGGTCGACATTGTCCAATTTTCGGCGTCAATCGCGAGGTTTTGGTTCCAATACCGAAGCCGGTCGGCTACACAGGAG
CTGATCCGTATAAAATATCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTG
AGGTACTCTGGAAGTGATCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCA
TTGGCCAAAGCATATCCTTGTCCGTTATACATGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTC
TGTCAATTTACATATTGCAATCATCGAAGGAGAAGTTAGCAAGGTTTGTAAGAGAAACGGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTCGAATAG

mRNA sequence

Show/hide mRNA sequence

CAAGGATCCACCGCCAATCCAAAAGCGGGAGAAGAGGCAAGCGATTCTATAGAGCTGAGGTTCTTCGAAAAATTAGGCAAATCACCGTCGACGATGGGAGAACCTCCATT
TCTGTTGCTCCTAGTTTCGCTATTCTCGCTGATTCCGAATTTTCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGTAAGATGGGGCAGTATCACTCGTCGAGAACAG
TTTGGCACGATATGATTGGTCGACATTGTCCAATTTTCGGCGTCAATCGCGAGGTTTTGGTTCCAATACCGAAGCCGGTCGGCTACACAGGAGCTGATCCGTATAAAATA
TCCTTTCAAGTTGGAAAAGAAAAGTTTCTTGTCCCATGGCTTCTTGTGATCAATCGCAAAAGTGCACAAGTCCCAATGATTGATGTCCACTTGAGGTACTCTGGAAGTGA
TCTTCATGGTGTGACTGCCAAAGTAATGGATATGCCTCATATCTATCTTGATTCGCATCCACATATTAGCCAACAATTCTGGGATCAACAGCATTGGCCAAAGCATATCC
TTGTCCGTTATACATGGGAGGAGCAATCGGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTGTTGCTGACTTTTATTCTGTCAATTTACATATTG
CAATCATCGAAGGAGAAGTTAGCAAGGTTTGTAAGAGAAACGGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTCGAATAGACTCACTACAACTCACTCCG
TCCTACTCCTTAGGGTTAGGCTCCATTACGTCCATTCAAGGAAGCTCAATTACAATCACTCCATCGGATTTCACATTTCTTTTGAACACAAAAATGTAACTCTTTATTTT
ATCTGTATGGTAAGGTGTATATGCAACTCGGAAGACAATTACAGAGACCCTTGTTTTCATTTTCTAGGTCGGGAGAGAATCTTTCTTTTGTACATGAGACTAGACTAGTT
GCGTAATTGCCTGCTATTGTAGGCTTCTATACTTTCTACTTTCTGTCTCCATAACTGTCATCTCCATTGGAAACTTCTAGAGAAATGAAACTTTTGTTTGTCCAAAACAG

Protein sequence

Show/hide protein sequence

MGEPPFLLLLVSLFSLIPNFLAYRPGDIVPMSKMGQYHSSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLVPWLLVINRKSAQVPMIDVHL
RYSGSDLHGVTAKVMDMPHIYLDSHPHISQQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLLLTFILSIYILQSSKEKLARFVRETVVESSIPGVGVAKVE

CmoCh06G001880 (gene) of Cucurbita moschata (Rifu) v1 genome