; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G002000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G002000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSel1-like protein
Genome locationCmo_Chr06:1085432..1087860
RNA-Seq ExpressionCmoCh06G002000
SyntenyCmoCh06G002000
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR006597 - Sel1-like repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442362.1 PREDICTED: uncharacterized protein LOC103486254 [Cucumis melo]5.7e-4693Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

XP_022157335.1 uncharacterized protein LOC111024062 [Momordica charantia]7.4e-4693Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTE L+RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLT DS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

XP_022934166.1 uncharacterized protein LOC111441393 [Cucurbita moschata]5.0e-50100Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

XP_022971526.1 uncharacterized protein LOC111470221 [Cucurbita maxima]5.5e-4998Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

XP_023538764.1 uncharacterized protein LOC111799597 [Cucurbita pepo subsp. pepo]1.2e-4898Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTEA NRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

TrEMBL top hitse value%identityAlignment
A0A1S3B5I4 uncharacterized protein LOC1034862542.7e-4693Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

A0A5D3DNP0 Sel1-like protein2.7e-4693Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTE LNRVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LT DS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

A0A6J1DSS4 uncharacterized protein LOC1110240623.6e-4693Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTE L+RVPLSEVVSDCVKRWFKDTL EAK GDINMQVLVGQMYYSGYG+PRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLT DS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

A0A6J1F1H3 uncharacterized protein LOC1114413932.4e-50100Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

A0A6J1I270 uncharacterized protein LOC1114702212.7e-4998Show/hide
Query:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS
        ME SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD+THDS
Subjt:  METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)4.8e-3580.49Show/hide
Query:  VPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD
        VPLS VVSDC KRWFKDTL EAK G+I MQVL+GQMYYSGYG+P+DA+KGR+W+TKASR RSSVWKV DK PGYNASDSDS+
Subjt:  VPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD

AT5G05360.1 unknown protein2.2e-3570.65Show/hide
Query:  SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD
        + G++ +NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR W+ KASR+RSS W+VSDK PGYNASDSDS+D
Subjt:  SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDD

AT5G05360.2 unknown protein5.5e-3167.86Show/hide
Query:  SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYN
        + G++ +NRVPL++VV DCV+RWF+DTL EAK GD+ MQVLVGQMY SGYGIP+D  KGR W+ KASR+RSS W+VSDK PG N
Subjt:  SGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTAGCGGAGGAACAGAAGCCTTGAATCGCGTTCCGCTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGG
GGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCGTCAAGAAGTCGGT
CATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACTTGACTCACGATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACTAGCGGAGGAACAGAAGCCTTGAATCGCGTTCCGCTATCAGAAGTTGTTTCTGATTGCGTCAAAAGATGGTTTAAGGATACTTTGACAGAGGCCAAGCGTGG
GGATATCAACATGCAGGTCTTGGTTGGTCAAATGTATTATAGCGGTTATGGCATTCCAAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCGTCAAGAAGTCGGT
CATCCGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGCGATTCGGACTCAGATGACTTGACTCACGATTCTTAACTAGATCAGTGCTGTATGTCATGTCGA
AACAACCACTGGATGTGCTTTTCACTTGGGGAACTCTACTTGCTCAGCAACATTCGCAGCTGCGAAGAACAACATTCGTGCACTGAATTTAAAAAATGTAATATGCTTTG
ATTTCACCTTTACCCTACAAAGAATTTGTGGTCAAATAGGCTAAATCCTATATCCATTTTTTTATTCTGTTTAGGTTGCCTCTGTTCACTGTCTGCCAGACATTTTCAAT
TGATTTTTGCATAATTGTTAAATTCTGAACTCTTTTAGTTGCTAATCAAATTCCCTTTTAAGAACAA
Protein sequenceShow/hide protein sequence
METSGGTEALNRVPLSEVVSDCVKRWFKDTLTEAKRGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTHDS