CuGenDBv2

Gene ID	CmoCh06G002030
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	influenza virus NS1A-binding protein homolog
Genome location	Cmo_Chr06:1092316..1105717
RNA-Seq Expression	CmoCh06G002030
Synteny	CmoCh06G002030
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596325.1 Nuclear pore complex protein NUP98A, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-19

39.33

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Query:  FYVFSIPCCFLYSM--YFQFLYSQLLAAF--------------LAFPVFSVIAFPVFSNY-------LWLFLLFLYSQLLAAFL-----------AFPVF
        F V S+P   ++S+  +  FLYSQLL AF               AFPVFS+  FPVF +        +  F +F        F            AFPVF
Subjt:  FYVFSIPCCFLYSM--YFQFLYSQLLAAF--------------LAFPVFSVIAFPVFSNY-------LWLFLLFLYSQLLAAFL-----------AFPVF

Query:  SVIAFPV-FSVPVFAVFSVPCSFSCFSC---------ILSYLQLFLYSCILSSCFSCILVFSVTYCSSCILNSRLLTALPVFSVPAYLL------LFLYS
        S+  FPV FSVP F VFSV   +SC S          + S   LFLYSCIL+SCFSCI VFS+              A PVF    +LL      +FLYS
Subjt:  SVIAFPV-FSVPVFAVFSVPCSFSCFSC---------ILSYLQLFLYSCILSSCFSCILVFSVTYCSSCILNSRLLTALPVFSVPAYLL------LFLYS

Query:  QFLIALRVFSITYCSSCILSYLLLFLYSQFLTAFPVFSVPYFLYSQSCFFLYSYI---------LIPIFSVPAFPVFSVTYCFSCILSYLPLFLYSQLFA
        QFL+        +  SCILSYLLLFLYSQ L +     +  FLYSQ   FL S             P+ SVPAFPV SV       +   P+FLYSQL  
Subjt:  QFLIALRVFSITYCSSCILSYLLLFLYSQFLTAFPVFSVPYFLYSQSCFFLYSYI---------LIPIFSVPAFPVFSVTYCFSCILSYLPLFLYSQLFA

Query:  AFLAFSFLLCSACILSFCFALPV-FSVTACPVFSVFTSVSQFLSIYAFPAFLVSEY
        AF  FS               PV FSV A PVFS+ T+   F S+ AFP F ++ +
Subjt:  AFLAFSFLLCSACILSFCFALPV-FSVTACPVFSVFTSVSQFLSIYAFPAFLVSEY

KAG7027877.1 Influenza virus NS1A-binding protein-like A, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.1e-16

88.52

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Query:  MNLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKL
        MNLENNGSFGEPIKSIESNE DFGSVTELQS I K   EIQELKNSKA QAKKIVFLEEKL
Subjt:  MNLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TLJ1 Kelch-like protein 2 isoform X1

4.6e-05

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Query:  NLENNGSFGEPIKSIESNEVDFGSVTELQ---SPIPKEIQELKNSKADQAKKIVFLEEKL
        NLENN    EPIKS ES+  DF S TEL    + + +EIQEL+ SKA+Q +KIVFLEEKL
Subjt:  NLENNGSFGEPIKSIESNEVDFGSVTELQ---SPIPKEIQELKNSKADQAKKIVFLEEKL

A0A5D3DNS2 Kelch-like protein 2 isoform X2

4.6e-05

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Query:  NLENNGSFGEPIKSIESNEVDFGSVTELQ---SPIPKEIQELKNSKADQAKKIVFLEEKL
        NLENN    EPIKS ES+  DF S TEL    + + +EIQEL+ SKA+Q +KIVFLEEKL
Subjt:  NLENNGSFGEPIKSIESNEVDFGSVTELQ---SPIPKEIQELKNSKADQAKKIVFLEEKL

A0A6J1DU24 influenza virus NS1A-binding protein homolog

6.3e-07

63.33

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Query:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKL
        NLEN G+ GEPI+S ++NE D GS TELQS + K   EIQELK+ KA+QA+KI FLE KL
Subjt:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKL

A0A6J1F1G5 influenza virus NS1A-binding protein homolog

2.1e-10

61.11

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Query:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKLWSSMACLGGLDG
        NL NNGS GEPIKS ES+E DFG++T LQSPI K   E+QELK S A+QA++IVFLEEKL ++   +  L G
Subjt:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKLWSSMACLGGLDG

A0A6J1J5H4 influenza virus NS1A-binding protein homolog

8.6e-12

60.26

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Query:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKLWSSMACLGGLDGNDYLNY
        NL NNGS GEPIKS ESNE DFG++T LQSPI K   E+QELK+S A+QA++IVFLEEKL ++   +  L G    NY
Subjt:  NLENNGSFGEPIKSIESNEVDFGSVTELQSPIPK---EIQELKNSKADQAKKIVFLEEKLWSSMACLGGLDGNDYLNY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATTTGGAGAATAATGGTAGTTTCGGTGAACCAATAAAGTCCATAGAGAGCAATGAAGTGGACTTTGGTTCTGTGACCGAACTTCAGTCTCCCATTCCCAAGGAGAT
ACAAGAGCTAAAAAATTCTAAAGCAGATCAAGCTAAGAAAATAGTTTTCTTGGAGGAAAAGCTGTGGAGCTCAATGGCGTGCTTAGGTGGGCTTGATGGCAATGACTATT
TGAACTATGAAGATTTTCTCTTGAATAGAAAAGAGGCGGAGGCTACCATATTTGTTGCTTTACTTAATTACTTGCTGCTTTTCGTATTCTATGTATTTTCAATTCCTTGC
TGCTTTTTGTATTCTATGTATTTTCAATTCCTGTATTCTCAGTTACTAGCTGCTTTTCTTGCTTTTCCTGTATTCTCCGTTATTGCTTTTCCTGTATTCTCCAATTACTT
GTGGCTTTTCTTGCTTTTCCTGTATTCTCAGTTACTAGCTGCTTTTCTTGCTTTTCCTGTATTCTCCGTTATTGCTTTTCCTGTATTCTCAGTTCCTGTTTTTGCTGTAT
TCTCAGTTCCTTGCAGCTTTTCTTGCTTTTCCTGTATTCTCAGTTACTTGCAGCTTTTCCTGTATTCCTGTATTCTCAGTTCCTGCTTTTCCTGTATTCTTGTATTCTCA
GTTACTTACTGCTCTTCCTGTATTCTCAATTCCCGCTTGCTTACTGCTCTTCCTGTATTCTCAGTTCCTGCTTATTTACTGCTCTTCCTGTATTCTCAGTTCCTTATTGC
TCTTCGTGTATTCTCAATTACTTACTGCTCTTCCTGTATTCTCAGTTACTTACTGCTCTTCCTGTATTCTCAGTTCCTTACTGCTTTTCCTGTATTCTCAGTTCCTTACT
TCCTGTATTCTCAGTCCTGCTTTTTCCTTTATTCCTATATTCTTATTCCTATATTCTCAGTTCCTGCTTTTCCTGTATTCTCAGTTACTTACTGCTTTTCCTGTATTCTC
AGTTACTTGCCACTTTTCCTGTATTCTCAGTTATTTGCCGCTTTTCTTGCTTTTTCTTTTCTGCTTTGCTCTGCCTGTATTCTCAGTTTCTGTTTTGCTCTTCCTGTATT
CTCAGTCACTGCTTGTCCTGTATTCTCAGTTTTTACTTCTGTTTCTCAGTTTCTTTCCATTTATGCTTTCCCTGCATTCTTAGTTTCAGAGTATTTTATGAAAATGAGTT
GGGAGGATACTGAGAATCATTATGGTAATGGTAAGGTGCTTAAACAAGCAAGAGGAAAAATTATCAACGAAGGCCTCGTGGCGTAA

mRNA sequence

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Protein sequence

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MNLENNGSFGEPIKSIESNEVDFGSVTELQSPIPKEIQELKNSKADQAKKIVFLEEKLWSSMACLGGLDGNDYLNYEDFLLNRKEAEATIFVALLNYLLLFVFYVFSIPC
CFLYSMYFQFLYSQLLAAFLAFPVFSVIAFPVFSNYLWLFLLFLYSQLLAAFLAFPVFSVIAFPVFSVPVFAVFSVPCSFSCFSCILSYLQLFLYSCILSSCFSCILVFS
VTYCSSCILNSRLLTALPVFSVPAYLLLFLYSQFLIALRVFSITYCSSCILSYLLLFLYSQFLTAFPVFSVPYFLYSQSCFFLYSYILIPIFSVPAFPVFSVTYCFSCIL
SYLPLFLYSQLFAAFLAFSFLLCSACILSFCFALPVFSVTACPVFSVFTSVSQFLSIYAFPAFLVSEYFMKMSWEDTENHYGNGKVLKQARGKIINEGLVA

CmoCh06G002030 (gene) of Cucurbita moschata (Rifu) v1 genome