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CmoCh06G002330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G002330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal RNA large subunit methyltransferase E
Genome locationCmo_Chr06:1244008..1247064
RNA-Seq ExpressionCmoCh06G002330
SyntenyCmoCh06G002330
Gene Ontology termsGO:0002128 - tRNA nucleoside ribose methylation (biological process)
GO:0002181 - cytoplasmic translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008175 - tRNA methyltransferase activity (molecular function)
InterPro domainsIPR002877 - Ribosomal RNA methyltransferase FtsJ domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2685992.1 hypothetical protein I3760_10G154000 [Carya illinoinensis]1.1e-1783.05Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP   + P+
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV

KAG6596355.1 putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia]3.7e-6981.14Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRNPSIAHTRTGEGIRELNLPWIPDCAIQCWIT
        MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRN SIAHTRTG                     
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRNPSIAHTRTGEGIRELNLPWIPDCAIQCWIT

Query:  CKVDLDGRVAPLIVNQPTILANGNLSYSKAWPSKFTDICSSSRHLDKESFELRRLKLDYHLLQHHLTETGTQKNV
        C+        PLIVNQPTILANGNLSYSKAWPSKFTDICSSSRHLDK+ FELRRLKLDYHLLQHHLTETGTQKNV
Subjt:  CKVDLDGRVAPLIVNQPTILANGNLSYSKAWPSKFTDICSSSRHLDKESFELRRLKLDYHLLQHHLTETGTQKNV

KAG7027905.1 Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma]4.0e-3198.63Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRNPSI
        MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRN SI
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRNPSI

XP_022950393.1 putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Cucurbita moschata]7.2e-20100Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

XP_042946359.1 putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase isoform X2 [Carya illinoinensis]1.1e-1783.05Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP   + P+
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV

TrEMBL top hitse value%identityAlignment
A0A067EPX4 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase5.5e-1883.05Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP   + P+
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPV

A0A1U7WEB4 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase9.4e-1892.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

A0A2P5YEP2 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase9.4e-1892.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

A0A6I9T3P2 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase9.4e-1892.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

A0A6J1GES5 putative tRNA (Cytidine(32)/guanosine(34)-2'-O)-methyltransferase3.5e-20100Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

SwissProt top hitse value%identityAlignment
O36015 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase1.1e-1571.15Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MG++S+DKR+ YY  AKE+GWRARSAFKLL ++E+FN+FEG KRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

Q22031 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase2.7e-1471.15Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGK SRDKR+IYY  AKE  WRARSAFKL+ ID+EF I +GV+R V+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

Q54VA8 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase2.4e-1882.69Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGK+S+DKR+IYY KAKEEGWRARSAFKL+ IDEE+ IFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

Q9UET6 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase1.6e-1467.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MG+ S+DKR++YY  AKE GWRARSAFKLL +D+EF +F+GV R V+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

Q9VEP1 Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 19.4e-1569.23Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGK S+DKR+IYY +AK+EGWRARSAFKLL++DE + I  GV+R V+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

Arabidopsis top hitse value%identityAlignment
AT4G25730.1 FtsJ-like methyltransferase family protein2.4e-0539.62Show/hide
Query:  MGKA-SRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGK   + + + YY  AKE G+R+R+++KLL +D ++++      V++LCAAP
Subjt:  MGKA-SRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

AT5G01230.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein1.8e-2192.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP

AT5G01230.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein1.8e-2192.31Show/hide
Query:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP
        MGKASRDKR+IYY KAKEEGWRARSAFKLL IDEEFNIFEGVKRVV+LCAAP
Subjt:  MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAAGCTTCAAGAGATAAGAGGAATATATACTATAGTAAAGCAAAAGAAGAAGGCTGGCGTGCTCGAAGTGCGTTCAAACTTCTGAACATAGATGAAGAATTTAA
CATATTTGAAGGAGTCAAGCGAGTGGTGAATTTATGCGCAGCCCCTGCTGAAGTTGCTTTTCCCGTAGTGACTTTTGCAAAACCGAAAGGCAGTCGCAATCCCAGTATAG
CTCATACGAGGACTGGTGAAGGAATTCGAGAACTAAACCTTCCTTGGATTCCGGATTGTGCTATTCAATGTTGGATAACCTGCAAAGTTGATTTGGATGGACGGGTGGCC
CCCCTGATTGTGAATCAACCAACCATCCTTGCTAATGGGAATCTGAGCTATTCAAAGGCGTGGCCCTCCAAATTCACAGATATCTGCTCGAGTTCAAGGCATTTAGACAA
GGAAAGTTTCGAGCTTCGAAGATTGAAACTCGATTATCATCTGCTACAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTATTTCAATTTTGACCATGAATGTGGAAACCTCTTGTTGTCATTGGAGGAATTTGAAGCTCCAATTGGGTTGTTGCTGTAAGGCTTGGTGACCTGCTGTAACTT
TCTTGATCCTTCAGTCATGGGCAAAGCTTCAAGAGATAAGAGGAATATATACTATAGTAAAGCAAAAGAAGAAGGCTGGCGTGCTCGAAGTGCGTTCAAACTTCTGAACA
TAGATGAAGAATTTAACATATTTGAAGGAGTCAAGCGAGTGGTGAATTTATGCGCAGCCCCTGCTGAAGTTGCTTTTCCCGTAGTGACTTTTGCAAAACCGAAAGGCAGT
CGCAATCCCAGTATAGCTCATACGAGGACTGGTGAAGGAATTCGAGAACTAAACCTTCCTTGGATTCCGGATTGTGCTATTCAATGTTGGATAACCTGCAAAGTTGATTT
GGATGGACGGGTGGCCCCCCTGATTGTGAATCAACCAACCATCCTTGCTAATGGGAATCTGAGCTATTCAAAGGCGTGGCCCTCCAAATTCACAGATATCTGCTCGAGTT
CAAGGCATTTAGACAAGGAAAGTTTCGAGCTTCGAAGATTGAAACTCGATTATCATCTGCTACAGCATCATCTTACAGAGACGGGCACGCAAAAGAATGTCTAA
Protein sequenceShow/hide protein sequence
MGKASRDKRNIYYSKAKEEGWRARSAFKLLNIDEEFNIFEGVKRVVNLCAAPAEVAFPVVTFAKPKGSRNPSIAHTRTGEGIRELNLPWIPDCAIQCWITCKVDLDGRVA
PLIVNQPTILANGNLSYSKAWPSKFTDICSSSRHLDKESFELRRLKLDYHLLQHHLTETGTQKNV