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CmoCh06G003510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G003510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLow temperature and salt responsive protein family
Genome locationCmo_Chr06:1709824..1714036
RNA-Seq ExpressionCmoCh06G003510
SyntenyCmoCh06G003510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR000612 - Proteolipid membrane potential modulator


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596455.1 Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5378.52Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKK---------------------------KKTKKKKNQCFLHHFS
        MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKK                           KK KKKKNQCFLHHFS
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKK---------------------------KKTKKKKNQCFLHHFS

Query:  FWHFLFNLWFKRKKLPGFSHFKRNSRGRLPFSGVHLVTVGQKGGAKGRK
        FWHF FN  FKRKKLPGFSHFKRNSRGRLPFSGVHLVTVGQKG AKGRK
Subjt:  FWHFLFNLWFKRKKLPGFSHFKRNSRGRLPFSGVHLVTVGQKGGAKGRK

XP_004137807.1 low temperature-induced protein lt101.2 [Cucumis sativus]3.0e-2185.25Show/hide
Query:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL+
Subjt:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

XP_022145681.1 low temperature-induced protein lt101.2-like [Momordica charantia]6.1e-2285.48Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQG+RIPKRMGSATF+EVL+A+FIPPLGVFLRYGIG+EFWI L+LTFLGYLPGI+YAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

XP_022945600.1 low temperature-induced protein lt101.2-like [Cucurbita moschata]1.7e-2498.39Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

XP_038906189.1 low temperature-induced protein lt101.2-like [Benincasa hispida]1.6e-2288.71Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQG+RIPKRMGSATF+EVL+AIFIPPLGVFLRYGIG+EFWIDLVLT  GYLPGIIYAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

TrEMBL top hitse value%identityAlignment
A0A0A0LAU7 Uncharacterized protein1.5e-2185.25Show/hide
Query:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        Q +RIPKRMGSATF+EVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGIIYAVYVL+
Subjt:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

A0A1S3B667 low temperature-induced protein lt101.2-like1.5e-2185.25Show/hide
Query:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIG+EFWIDLVLTF GY+PGI+YAVYVL+
Subjt:  QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

A0A6J1CX15 low temperature-induced protein lt101.2-like3.0e-2285.48Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQG+RIPKRMGSATF+EVL+A+FIPPLGVFLRYGIG+EFWI L+LTFLGYLPGI+YAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

A0A6J1G1E1 low temperature-induced protein lt101.2-like8.3e-2598.39Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

A0A6J1KU26 low temperature-induced protein lt101.2-like8.3e-2598.39Show/hide
Query:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVL+
Subjt:  MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

SwissProt top hitse value%identityAlignment
P68178 Salt stress-induced hydrophobic peptide ESI32.6e-1573.58Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVL+
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

P68179 Low temperature-induced protein lt101.12.6e-1573.58Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MGSAT +EV++AI +PP+GVFLRY +GVEFWI L+LT LGY+PGIIYAVYVL+
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

Q9ARD5 Low temperature-induced protein lt101.26.8e-1673.58Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        M SATF+EV++AI +PP+GVFLRYG+ VEFWI L+LT LGY+PGIIYAVYVL+
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

Q9ZNQ7 Hydrophobic protein RCI2A3.1e-1674.07Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK
        M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL K
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK

Q9ZNS6 Hydrophobic protein RCI2B6.4e-1462.96Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK
        M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++ K
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK

Arabidopsis top hitse value%identityAlignment
AT1G57550.1 Low temperature and salt responsive protein family2.9e-1466.67Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK
        MGS  F+EVL AIFIPP+GVFLRYG+G+EFW+ L+LT   ++PG+IYA+YVL K
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK

AT2G38905.1 Low temperature and salt responsive protein family4.8e-1771.7Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL
        MGS TF+E+++AI +PP+GVFLRYG GVEFWI L+LT LGY+PGIIYA+YVL+
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLL

AT3G05880.1 Low temperature and salt responsive protein family2.2e-1774.07Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK
        M +ATFV+++IAI +PPLGVFLR+G GVEFWI LVLT LGY+PGIIYA+YVL K
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK

AT3G05890.1 Low temperature and salt responsive protein family4.5e-1562.96Show/hide
Query:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK
        M +ATFVE+++AI +PPLGVFL++G  VEFWI L+LT  GYLPGI+YA+Y++ K
Subjt:  MGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLK

AT4G30650.1 Low temperature and salt responsive protein family6.3e-0959.26Show/hide
Query:  FVEVLIAIFIPPLGVFLRYG-IGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKKK
        F E+LIAI +PPLGV L+ G   VEF I LVLT LGY+PGIIYA+YV++ + ++
Subjt:  FVEVLIAIFIPPLGVFLRYG-IGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGCGAACGAATCCCAAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGT
AGAATTTTGGATTGATTTGGTGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGCTGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGA
ACCAGTGCTTTCTTCACCACTTCTCATTTTGGCACTTCCTCTTCAATCTTTGGTTCAAGAGGAAAAAACTACCAGGTTTCTCTCATTTCAAGCGGAATAGCAGAGGTAGA
CTTCCATTTTCGGGGGTCCATTTGGTCACTGTAGGGCAAAAAGGAGGAGCAAAAGGGAGAAAGTTAAGGGTATTGTGGGTCAGACGACTCTAG
mRNA sequenceShow/hide mRNA sequence
GGAGGTGCTAGAAATTAGGAAGAGGTTTTAAAAGGGGGGCGATGAAGAGGTCTGGGCTCGCGGCGGCTATTAGCTAAGGGTTACGTGAAAATGCAAGGCGAACGAATCCC
AAAGCGAATGGGCTCAGCCACCTTCGTAGAAGTTCTTATCGCTATCTTCATCCCTCCCCTCGGCGTCTTCCTCCGCTATGGCATTGGGGTAGAATTTTGGATTGATTTGG
TGCTCACATTTTTGGGATACCTTCCTGGAATTATTTACGCCGTTTATGTTTTGCTGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAACCAGTGCTTTCTTCACCAC
TTCTCATTTTGGCACTTCCTCTTCAATCTTTGGTTCAAGAGGAAAAAACTACCAGGTTTCTCTCATTTCAAGCGGAATAGCAGAGGTAGACTTCCATTTTCGGGGGTCCA
TTTGGTCACTGTAGGGCAAAAAGGAGGAGCAAAAGGGAGAAAGTTAAGGGTATTGTGGGTCAGACGACTCTAG
Protein sequenceShow/hide protein sequence
MQGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGVEFWIDLVLTFLGYLPGIIYAVYVLLKKKKKKTKKKKNQCFLHHFSFWHFLFNLWFKRKKLPGFSHFKRNSRGR
LPFSGVHLVTVGQKGGAKGRKLRVLWVRRL