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CmoCh06G003620 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G003620
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-binding protein S1FA
Genome locationCmo_Chr06:1751601..1753781
RNA-Seq ExpressionCmoCh06G003620
SyntenyCmoCh06G003620
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651038.1 hypothetical protein Csa_000825 [Cucumis sativus]8.4e-2991.03Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_004137812.1 DNA-binding protein S1FA [Cucumis sativus]8.4e-2991.03Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_022951181.1 DNA-binding protein S1FA-like isoform X2 [Cucurbita moschata]4.7e-32100Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_023005220.1 DNA-binding protein S1FA-like isoform X1 [Cucurbita maxima]3.1e-3198.72Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

XP_038905724.1 DNA-binding protein S1FA-like [Benincasa hispida]6.4e-2992.31Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NV+NDV AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0LAW3 DNA-binding protein S1FA4.1e-2991.03Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A1S3B680 DNA-binding protein S1FA-like1.2e-2891.03Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NV+NDV AKGFNP L+VLLLVGGLLL FL+GNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1GGV1 DNA-binding protein S1FA-like isoform X22.3e-32100Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1GGX8 DNA-binding protein S1FA-like isoform X11.5e-28100Show/hide
Query:  ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

A0A6J1KWU8 DNA-binding protein S1FA-like isoform X11.5e-3198.72Show/hide
Query:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        MASANGK NVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
Subjt:  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA12.5e-2079.37Show/hide
Query:  AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

P42552 DNA-binding protein S1FA7.1e-2377.94Show/hide
Query:  MNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +N+V AKG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPPKKKKP+SKKKMKRERLKQGV+ PGE
Subjt:  MNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q42337 DNA-binding protein S1FA24.3e-2073.85Show/hide
Query:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q7XLX6 DNA-binding protein S1FA21.9e-2066.67Show/hide
Query:  ANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        A+   NV+ +   KG NPG++VL++V   LL+F +GNYALY+YAQK LPP+KKKPVSKKKMKRE+LKQGVSAPGE
Subjt:  ANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Q93VI0 DNA-binding protein S1FA34.3e-2072.31Show/hide
Query:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein3.1e-2173.85Show/hide
Query:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV  PGE
Subjt:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G09735.1 S1FA-like DNA-binding protein3.1e-2172.31Show/hide
Query:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV  PGE
Subjt:  VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G53370.1 S1FA-like DNA-binding protein1.8e-2179.37Show/hide
Query:  AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

AT3G53370.2 S1FA-like DNA-binding protein6.7e-0878.79Show/hide
Query:  YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE
        +A KNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Subjt:  YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAGCCAATGGTAAGGAAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCT
CATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCCCCCAAGAAGAAGAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGT
CTGCACCTGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTGCTGACATTTCTCCGTCAACGCTGCACCGCCAATTCGATCCAATTTCGTATATTCGGGATCTTCTTGCTGGCCGATCTAGCCAGCTCTGAGTCGCAGTCATGG
CGTCAGCCAATGGTAAGGAAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATA
GGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCCCCCAAGAAGAAGAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGC
ACCTGGAGAGTAAAAGAAAAAAATGACCAAGTGTTTAACTTCCCGAGGTTTCCTTCTTAGAACGGTTTGATTTTCCACAATTTTCATACATAGACTGCGTAGAAAGTTCT
TACAGTTGTTTATTTCTTTTGTTTGCTGTCTCTTAACTCTTCAGGAATTGATCTTGATTGTGAGTTTCTAACTCATATTACATTACATGGGCTCTTTTCTCAAGGTTCCA
TTGGTTTCTTTTCTGCTTATTCTCCTCTTTTTGGTACACACCAGAAAGATTTCTGTTTCTCCATCTTTAAACAGCCTTAACTCAGTCCTTTTTACTGTTGGAGTCTTTTC
TTTTTCTGCCTTTGAATCTTGCAATAAATGGTGGGGTTAGATTGTAGAGTCTCTATAGGGTTGAGTGATGGATTTGTGTAACTCTCTGTTTGGAAGATTAGAACACACTC
TTTTGAACAGGAAGACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAGAGACATGTTCCTCAAGGGGCCATTACTACCACTTATTTGAATCACGTGGAA
CACTAGAGACCATTGAAGCACAGAAAAGCTTACCTTTTACTGAAGCAAGTCATCTTGTCCCCCCTTGTGTGTTTTTTGTGGGATTCATTGTTTTCAAGTCTCCATCAACA
TAATTTCGAATGCTCTGCTGATATAAAAACACACTGCTTTTAGACTTTTACTGTTTTGTCATGTTGGCTGCTAGCTCAGTTGCTTGCTTTACTATACTCCCGCAGGCAAG
TAAGTCAGTGGCTTTTGATATTGGGCAATAAAGCACCCCATTTTTTGCTTTAACATTGCTTGTGGTGAAGGCACAGTGCCTGACTCGACTCTTTTGAAATTAGGTTATGC
GCATTTGTTTTTGCTCCTATGGAAGATGGGGGACAAGTATTTGTTTTATGCATATGTTGTCATTGTCTTTACGCCCTATCAAGATTCAATTTGAGCATAGTTCAAATAGT
TAAAAAGACATTATTGAACCGGAC
Protein sequenceShow/hide protein sequence
MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE