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CmoCh06G004400 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G004400
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionENDO3c domain-containing protein
Genome locationCmo_Chr06:2116026..2116690
RNA-Seq ExpressionCmoCh06G004400
SyntenyCmoCh06G004400
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0080111 - DNA demethylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0019104 - DNA N-glycosylase activity (molecular function)
GO:0035514 - DNA demethylase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR044811 - DNA glycosylase, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596542.1 Protein ROS1A, partial [Cucurbita argyrosperma subsp. sororia]4.3e-1397.44Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFD+KSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
KAG7028076.1 Transcriptional activator DEMETER, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-13100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
XP_022939958.1 protein ROS1-like [Cucurbita moschata]1.5e-13100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
XP_023005636.1 protein ROS1-like [Cucurbita maxima]1.5e-13100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
XP_023540192.1 protein ROS1-like [Cucurbita pepo subsp. pepo]1.5e-13100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
TrEMBL top hitse value%identityAlignment
A0A0A0LAQ7 ENDO3c domain-containing protein3.0e-1292.31Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQK+RAPRPLMARLHFPASKLNRG+GKT DQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
A0A1S4DUL3 protein ROS13.0e-1292.31Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQK+RAPRPLMARLHFPASKLNRG+GKT DQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
A0A6J1FMZ6 protein ROS1-like7.2e-14100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
A0A6J1J0D5 protein ROS1-like5.1e-1292.31Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFD+KSRAPRPLMARLHFPASKLNRG+GKT DQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
A0A6J1KVJ5 protein ROS1-like7.2e-14100Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
SwissProt top hitse value%identityAlignment
B8YIE8 Protein ROS1C3.4e-0553.85Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
        GFVCVRGF+ ++RAPRPL    H  ASKL R   K   +
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ
C7IW64 Protein ROS1A1.8e-0975.68Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTG
        GFVCVRGFD+ SRAPRPL ARLHFPASK+ R K   G
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTG
Q8LK56 Transcriptional activator DEMETER7.9e-1084.85Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK
        GFVCVRGF+QK+RAPRPLMARLHFPASKL   K
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK
Q9SJQ6 DNA glycosylase/AP lyase ROS19.6e-0879.31Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKL
        G+VCVRGFD+K+R P+PL+ARLHFPASKL
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKL
Arabidopsis top hitse value%identityAlignment
AT2G36490.1 demeter-like 16.9e-0979.31Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKL
        G+VCVRGFD+K+R P+PL+ARLHFPASKL
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKL
AT5G04560.1 HhH-GPD base excision DNA repair family protein5.6e-1184.85Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK
        GFVCVRGF+QK+RAPRPLMARLHFPASKL   K
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK
AT5G04560.2 HhH-GPD base excision DNA repair family protein5.6e-1184.85Show/hide
Query:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK
        GFVCVRGF+QK+RAPRPLMARLHFPASKL   K
Subjt:  GFVCVRGFDQKSRAPRPLMARLHFPASKLNRGK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGTTTAACATTTATAAAACAAAGTACGAGGTTAAAAATGTAAGAATACTAGTAGCAGCGTACACAATTTTAGGCTCTACTGGATTCGTCTGTGTAAGAGGTTT
TGATCAAAAATCAAGGGCACCCCGACCTTTGATGGCCAGGCTTCATTTTCCAGCCAGCAAATTGAACAGAGGAAAGGGCAAGACAGGGGACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGTTTAACATTTATAAAACAAAGTACGAGGTTAAAAATGTAAGAATACTAGTAGCAGCGTACACAATTTTAGGCTCTACTGGATTCGTCTGTGTAAGAGGTTT
TGATCAAAAATCAAGGGCACCCCGACCTTTGATGGCCAGGCTTCATTTTCCAGCCAGCAAATTGAACAGAGGAAAGGGCAAGACAGGGGACCAATAAGAGGAGGTGAAGC
CCAAACCAGGATGGCACGAACAACATAGCAGTAAGAAAAGAAACATTTAGTGACACCGCATCCAACCCATGGCGAATAAGTTAGTATCCATTTGTAAATTCTTGTCTTAT
ACGTGATTAACGGGATTAGAATTAGTCATTTCGGGCACAGATCCGAACCGTTCATATCGACCAACACTAGCCATGAATTATTTACTAATTTCTCTATCCAAGATGTGAGA
TACCAGGTTAAATAGCATACAGCAGATTACAGCACATCAG
Protein sequenceShow/hide protein sequence
MNKFNIYKTKYEVKNVRILVAAYTILGSTGFVCVRGFDQKSRAPRPLMARLHFPASKLNRGKGKTGDQ