CuGenDBv2

Gene ID	CmoCh06G004670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein LITTLE ZIPPER 4
Genome location	Cmo_Chr06:2273114..2273326
RNA-Seq Expression	CmoCh06G004670
Synteny	CmoCh06G004670
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039312 - Protein LITTLE ZIPPER

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028099.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-27

98.57

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKSIPDLNVCSASLTNPSNSSR
        MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKSIPDLN+CSASLTNPSNSSR
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKSIPDLNVCSASLTNPSNSSR

XP_006481795.1 protein LITTLE ZIPPER 4-like [Citrus sinensis]

1.7e-20

78.67

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR
        MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K     +IPDLN+CS+S TNPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR

XP_021908756.1 protein LITTLE ZIPPER 4 [Carica papaya]

2.9e-20

77.33

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR
        M+RLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG +K     ++PDLN+CS+S  NPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR

XP_022144704.1 protein LITTLE ZIPPER 4 [Momordica charantia]

8.9e-22

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG------KTKSIPDLNVCSASLTNPSNSS
        MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG       +KSIPDLN+ SAS+TNPSNS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG------KTKSIPDLNVCSASLTNPSNSS

XP_024038073.1 protein LITTLE ZIPPER 4 [Citrus clementina]

9.8e-21

80.82

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR
        MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+CS+S TNPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR

TrEMBL top hits

e value

%identity

Alignment

A0A067F196 Uncharacterized protein

4.8e-21

80.82

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR
        MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+CS+S TNPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR

A0A6J1ARG7 protein LITTLE ZIPPER 4

4.0e-20

78.67

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR
        MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG +K     +IPDLN+ S+S  NPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR

A0A6J1CT31 protein LITTLE ZIPPER 4

4.3e-22

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG------KTKSIPDLNVCSASLTNPSNSS
        MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG       +KSIPDLN+ SAS+TNPSNS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKG------KTKSIPDLNVCSASLTNPSNSS

A0A6P6AQP1 protein LITTLE ZIPPER 4-like isoform X2

2.0e-19

77.33

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR
        MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSK  +K     +IPDLN+ S+S  NPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK-----SIPDLNVCSASLTNPSNSSR

V4S7L4 Uncharacterized protein

4.8e-21

80.82

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR
        MERLNS LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKL+ G +K   +IPDLN+CS+S TNPSNSS+
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTK---SIPDLNVCSASLTNPSNSSR

SwissProt top hits

e value

%identity

Alignment

Q56WL5 Protein LITTLE ZIPPER 4

3.8e-15

86.27

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS
        MERLNS LYLQNCYI+KENERLRKKAQILNQENQ LL ELKQKLSK K  S
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS

Q9LXI8 Protein LITTLE ZIPPER 3

3.5e-13

74.51

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS
        MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS

Arabidopsis top hits

e value

%identity

Alignment

AT2G45450.1 protein binding

1.1e-04

51.16

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQK
        ME +N  LY++N  I++ENE+L+KKA +L+QEN+ L S L+ K
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQK

AT3G52770.1 protein binding

2.5e-14

74.51

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Query:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS
        MERLNS L+++NCYIMKENERLRKKA++LNQENQ LL +LKQKLSK K  +
Subjt:  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKS

Sequences

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CDS sequence

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ATGGAGAGGCTAAATTCGGATCTGTACTTGCAGAACTGTTACATAATGAAGGAAAATGAAAGACTGAGGAAGAAAGCACAGATATTGAACCAAGAAAATCAAGCTCTTCT
TTCAGAACTGAAGCAGAAATTGTCGAAAGGGAAAACGAAATCGATCCCTGATCTTAATGTATGCTCTGCTTCGCTTACAAATCCTTCTAATTCTTCACGTTGA

mRNA sequence

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Protein sequence

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MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGKTKSIPDLNVCSASLTNPSNSSR

CmoCh06G004670 (gene) of Cucurbita moschata (Rifu) v1 genome