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CmoCh06G004810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G004810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationCmo_Chr06:2332475..2333579
RNA-Seq ExpressionCmoCh06G004810
SyntenyCmoCh06G004810
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]5.3e-5095.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]1.1e-52100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]6.9e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTD+NQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]4.0e-5095.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]5.6e-5299.06Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIY KSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B2.5e-5095.28Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD+NQI+VKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1F9M2 replication protein A 14 kDa subunit B-like7.4e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTD++QI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1FQS1 replication protein A 14 kDa subunit B-like5.5e-53100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

A0A6J1J6J3 replication protein A 14 kDa subunit B-like3.3e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGVIYGKSTD+NQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLF+
Subjt:  FKPLFI

A0A6J1L034 replication protein A 14 kDa subunit B-like5.5e-53100Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        FKPLFI
Subjt:  FKPLFI

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.9e-3465.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTD+ QIVVKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI

Q9LXK1 Replication protein A 14 kDa subunit A3.0e-3261.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

Q9SDK9 Replication protein A 14 kDa subunit3.1e-2952.83Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTS P+ FVN E+L+++VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
         K LF+
Subjt:  FKPLFI

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.1e-3361.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.1e-3361.68Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G + GKSTD+ QIVV+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANG

Query:  EFKPLFI
        EFK LFI
Subjt:  EFKPLFI

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.3e-3565.09Show/hide
Query:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G + GKSTD+ QIVVKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGE

Query:  FKPLFI
        F+ LFI
Subjt:  FKPLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTTCAAACCCTTCAGTTTTTGTCAACGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCAT
ATATGGTAAATCAACAGATAACAATCAGATTGTTGTGAAAGGCTCCCCACCCTTTCCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTTTGGACCAATTTTGGCGACTCATTCGATACATCTACCTTCAATAAACTATGTCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACTTCAAACCCTTCAGTTTTTGTCAACGCTGAGCTTTTACGCCTGTATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAGTCTGAAGGCAACGGAGTCAT
ATATGGTAAATCAACAGATAACAATCAGATTGTTGTGAAAGGCTCCCCACCCTTTCCCCTTTCGAAGTTTGTCGAGGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTTTGGACCAATTTTGGCGACTCATTCGATACATCTACCTTCAATAAACTATGTCAGCTTGCTAATGGGGAGTTCAAACCCTTGTTTATCTGATACTCAAGC
TAGACATTCTTTGGTAAGAAAGCTCAACCTCTACCGTCACCTCTCGTGGCACGCTAAGTCGCCGATGTTTCTTCATGTTCGTCTGAAGCTTCTGAGAGATCCATCTCTCA
TGCGGTATAAAATGCTTCAGGTAATGGATATATGAAATTTGAGTATGCAATTAATGTTTGTGTTAGAATATAGTGTAATGAACACTGCTTCAAAATATTAATCAAGAAGC
TATTTTGATC
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI