; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G004830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G004830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSRP54 domain-containing protein
Genome locationCmo_Chr06:2334976..2335518
RNA-Seq ExpressionCmoCh06G004830
SyntenyCmoCh06G004830
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596576.1 Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4197.98Show/hide
Query:  GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
        GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEER+QAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKLRQN
Subjt:  GRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN

XP_022144747.1 uncharacterized protein LOC111014362 [Momordica charantia]2.4e-3177.67Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA VEEERK+AKK DTM+TLKTTFIVSGV+AAVAVAAF +VKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        R+N
Subjt:  RQN

XP_022947065.1 uncharacterized protein LOC111451047 [Cucurbita moschata]2.5e-44100Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        RQN
Subjt:  RQN

XP_023005785.1 uncharacterized protein LOC111498680 [Cucurbita maxima]3.2e-4499.03Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        RQN
Subjt:  RQN

XP_023539528.1 uncharacterized protein LOC111800168 [Cucurbita pepo subsp. pepo]5.5e-3698.88Show/hide
Query:  GSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
        GSRFPAVDVDRELHPGHNQHV VDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
Subjt:  GSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN

TrEMBL top hitse value%identityAlignment
A0A0A0LBF7 Uncharacterized protein3.4e-2366.32Show/hide
Query:  GATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
        G+ G  G  FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  +E ++  KKK+ MQTLKTTFIVSG++AAVAVAAF +VKKLR+N
Subjt:  GATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN

A0A6J1CUK2 uncharacterized protein LOC1110143621.2e-3177.67Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA VEEERK+AKK DTM+TLKTTFIVSGV+AAVAVAAF +VKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        R+N
Subjt:  RQN

A0A6J1G5S8 uncharacterized protein LOC1114510471.2e-44100Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        RQN
Subjt:  RQN

A0A6J1J505 uncharacterized protein LOC1114817981.0e-2468.93Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MAS  RDGG T  AGSRFP VD +REL+PGHN+ V VDPISS+ AAS+  KEQ KRKA  EEER +AKKK+ MQTLK  FIVS V+AAVAV AF +VKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        R+N
Subjt:  RQN

A0A6J1KYC8 uncharacterized protein LOC1114986801.6e-4499.03Show/hide
Query:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL
        MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKL
Subjt:  MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKL

Query:  RQN
        RQN
Subjt:  RQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52620.1 unknown protein8.5e-1144.83Show/hide
Query:  FPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK-KKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
        FP  D + EL+PG N++  VDP+SS++A+    K        + E+R+ AK K+D  +TLK T IVS V+ AVA AAF + KKL++N
Subjt:  FPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK-KKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGGGGTGCAGGTTCCCGGTTTCCGGCAGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCACGTAACTGT
CGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAGGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGC
AGACATTAAAGACGACGTTCATCGTCTCCGGCGTCGTCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTTGTTAAGAAATTACGACAAAACTGA
mRNA sequenceShow/hide mRNA sequence
AAGAAAAAAAAAAAAAAAGGACAAAAAAAAAAGAATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGGGGTGCAGGTTCCCGGTTTCCGGCAGTAGACGTGGACAGAG
AATTACATCCCGGCCATAACCAGCACGTAACTGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAGGCGAAGAGGAAAGCAACTGTGGAAGAA
GAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCGTCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTTGTTAAGAA
ATTACGACAAAACTGATTCTCTTCTCCCTCAACTTTGCTCCTCCCTGTCTTCTCCAAATTTTTTATTTTTGTATTTTTTATTTTTTTTGCTGTGTGTTTATTACGTGG
Protein sequenceShow/hide protein sequence
MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN