; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G005380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G005380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionML domain-containing protein
Genome locationCmo_Chr06:2593968..2598445
RNA-Seq ExpressionCmoCh06G005380
SyntenyCmoCh06G005380
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR003172 - MD-2-related lipid-recognition domain
IPR014756 - Immunoglobulin E-set
IPR039670 - Sterol transport protein NPC2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596628.1 hypothetical protein SDJN03_09808, partial [Cucurbita argyrosperma subsp. sororia]6.4e-7899.32Show/hide
Query:  MEPSLLM-KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEPSLLM KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
Subjt:  MEPSLLM-KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

XP_008442939.1 PREDICTED: uncharacterized protein LOC103486693 [Cucumis melo]5.6e-6684.25Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEP+  MKLIF FLLWL F PQF FATRV LCDETA+YDI VKGVEISPSPIVRGHPTNMT NL+IG PIIAGKMVVDI YFGWH+YSDS+DICVETSCP
Subjt:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        Y SGDFAL P +TPLAFF+PGSYHMQITI+DG DNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

XP_022940446.1 uncharacterized protein LOC111445883 isoform X2 [Cucurbita moschata]2.6e-79100Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
        MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
Subjt:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY

Query:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

XP_023005906.1 uncharacterized protein LOC111498769 isoform X2 [Cucurbita maxima]7.0e-7797.95Show/hide
Query:  MEPS-LLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEPS LLMKLIFSFLLWLSFVP FF TRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
Subjt:  MEPS-LLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

XP_023538983.1 uncharacterized protein LOC111799753 isoform X2 [Cucurbita pepo subsp. pepo]2.6e-79100Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
        MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
Subjt:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY

Query:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

TrEMBL top hitse value%identityAlignment
A0A1S3B7M8 uncharacterized protein LOC1034866932.7e-6684.25Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEP+  MKLIF FLLWL F PQF FATRV LCDETA+YDI VKGVEISPSPIVRGHPTNMT NL+IG PIIAGKMVVDI YFGWH+YSDS+DICVETSCP
Subjt:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        Y SGDFAL P +TPLAFF+PGSYHMQITI+DG DNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

A0A5D3DP69 Putative phosphatidylglycerol/phosphatidylinositol transfer protein2.7e-6684.25Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEP+  MKLIF FLLWL F PQF FATRV LCDETA+YDI VKGVEISPSPIVRGHPTNMT NL+IG PIIAGKMVVDI YFGWH+YSDS+DICVETSCP
Subjt:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        Y SGDFAL P +TPLAFF+PGSYHMQITI+DG DNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

A0A6J1FIH7 uncharacterized protein LOC111445883 isoform X21.2e-79100Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
        MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY
Subjt:  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPY

Query:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  TSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

A0A6J1J1A9 uncharacterized protein LOC1114817842.1e-6382.88Show/hide
Query:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEP+  MKLIF+ LLWL FV QF FATRV LCDETAKYDIMVKGV+ISPSPIVRG P  MT NLIIGKPIIAGKMVVDI YFGWH+Y DS+DICVETSCP
Subjt:  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        Y+ GDFALAP QTPLAFF+PGSYHMQITI+DG DNKL CFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

A0A6J1KWB4 uncharacterized protein LOC111498769 isoform X23.4e-7797.95Show/hide
Query:  MEPS-LLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
        MEPS LLMKLIFSFLLWLSFVP FF TRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP
Subjt:  MEPS-LLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCP

Query:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
        YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
Subjt:  YTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

SwissProt top hitse value%identityAlignment
Q9AST8 MD-2-related lipid-recognition protein ROSY17.5e-0531.68Show/hide
Query:  KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFA
        +L+   L+ L F P     +   CD   +Y + V  VEISP P+ R     +T+  +  K I  G  V   L  G + V + SY +C  T+CP   G   
Subjt:  KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFA

Query:  L
        L
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT2G16005.1 MD-2-related lipid recognition domain-containing protein5.3e-0631.68Show/hide
Query:  KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFA
        +L+   L+ L F P     +   CD   +Y + V  VEISP P+ R     +T+  +  K I  G  V   L  G + V + SY +C  T+CP   G   
Subjt:  KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFA

Query:  L
        L
Subjt:  L

AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein1.4e-2738.69Show/hide
Query:  LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALA
        L  S+ L +S +    AT VH CD   +Y++ V+GV+I+P PI RG P    ++      I +GK+V+++ YFGWH++S+++D+C ETSCP   GDF +A
Subjt:  LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALA

Query:  PFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
          Q    +  PGSY +++ ++DG   +LTC  F +++
Subjt:  PFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

AT3G11780.2 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein3.0e-2536.13Show/hide
Query:  LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALA
        L  S+ L +S +    AT VH CD   +Y++ V+GV+I+P PI RG P    ++      I +GK+V+++ YFGWH++S+++D+C ETSCP   GDF +A
Subjt:  LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALA

Query:  -----PFQTP-------------LAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
             P  TP               F V GSY +++ ++DG   +LTC  F +++
Subjt:  -----PFQTP-------------LAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

AT3G44100.1 MD-2-related lipid recognition domain-containing protein2.4e-1935.61Show/hide
Query:  LLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTP
        LL + F+P   AT    CD+     + V GV+ISP P+V G      +    G+ I  GK+V+ +LY G  V+++++D+C ET+CP   G F L+  QT 
Subjt:  LLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTP

Query:  LAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
         +   PG+Y +++TI D +  +LTC  F +++
Subjt:  LAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL

AT5G06480.1 Immunoglobulin E-set superfamily protein1.3e-2840.71Show/hide
Query:  LMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDF
        ++ L   FLL L  V    A  VH C+E A+Y++ VK V+ISP+PI  G P   T++   G+ I  GK+V+++ YFGWHV+S+++D+C ETSCP  +GDF
Subjt:  LMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDF

Query:  ALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL
         +A  Q    +  PGSY +++ ++D    +LTC  F +++
Subjt:  ALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCACGACGCAATCAAACTGCTCTTCACTGCAATATAGTTTCTACGAGATTACACAAACTGCAAGATCCTAGGTCAACGGTTTGCTTGGTTCTTCTCTCCTTGCA
TTATTTTTTTATAAAATTTCTGTGTATCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCCCGCTCTCCAATGGCGTTCGTCTCATTCAGTTTCTCCCACTCTACTC
CACCGAAACCCCCGTTTTTCACGCGACTCCAGAGCTTCATTATTAGAATTTCTCAAAGTTCGAATTCCATGGAGCCCTCTCTTCTGATGAAGCTGATTTTTTCATTTCTT
CTTTGGCTAAGCTTTGTTCCACAGTTCTTCGCCACTCGAGTTCATCTCTGCGATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCAT
AGTTAGGGGTCACCCAACAAATATGACCTTAAATCTAATCATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTTATATTTCGGATGGCACGTATATAGTG
ACAGCTATGACATTTGTGTTGAGACGTCCTGCCCTTATACGTCTGGTGATTTTGCACTTGCCCCATTTCAAACGCCTCTGGCATTCTTTGTACCTGGTTCATATCATATG
CAGATAACCATTATTGATGGACATGACAATAAACTAACATGTTTTGGCTTTGATTATGAACTGCCTCCACTTTCTAGCTATATTGGAATCCAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCACGACGCAATCAAACTGCTCTTCACTGCAATATAGTTTCTACGAGATTACACAAACTGCAAGATCCTAGGTCAACGGTTTGCTTGGTTCTTCTCTCCTTGCA
TTATTTTTTTATAAAATTTCTGTGTATCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCCCGCTCTCCAATGGCGTTCGTCTCATTCAGTTTCTCCCACTCTACTC
CACCGAAACCCCCGTTTTTCACGCGACTCCAGAGCTTCATTATTAGAATTTCTCAAAGTTCGAATTCCATGGAGCCCTCTCTTCTGATGAAGCTGATTTTTTCATTTCTT
CTTTGGCTAAGCTTTGTTCCACAGTTCTTCGCCACTCGAGTTCATCTCTGCGATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCAT
AGTTAGGGGTCACCCAACAAATATGACCTTAAATCTAATCATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTTATATTTCGGATGGCACGTATATAGTG
ACAGCTATGACATTTGTGTTGAGACGTCCTGCCCTTATACGTCTGGTGATTTTGCACTTGCCCCATTTCAAACGCCTCTGGCATTCTTTGTACCTGGTTCATATCATATG
CAGATAACCATTATTGATGGACATGACAATAAACTAACATGTTTTGGCTTTGATTATGAACTGCCTCCACTTTCTAGCTATATTGGAATCCAGAACTGA
Protein sequenceShow/hide protein sequence
MKARRNQTALHCNIVSTRLHKLQDPRSTVCLVLLSLHYFFIKFLCIPSAKPRRRRDSSRSPMAFVSFSFSHSTPPKPPFFTRLQSFIIRISQSSNSMEPSLLMKLIFSFL
LWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPGSYHM
QITIIDGHDNKLTCFGFDYELPPLSSYIGIQN