; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G005570 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G005570
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionVQ domain-containing protein
Genome locationCmo_Chr06:2702781..2703113
RNA-Seq ExpressionCmoCh06G005570
SyntenyCmoCh06G005570
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]2.2e-3074.31Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE 
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC

Query:  VSACTYIPS
         SAC  IPS
Subjt:  VSACTYIPS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.9e-5096.36Show/hide
Query:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEE
        MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG GSSVAVVAASFSATGMIADHP E 
Subjt:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEE

Query:  CVSACTYIPS
        CVSAC YIPS
Subjt:  CVSACTYIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]5.0e-2769.91Show/hide
Query:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHP
        ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK+IHVRPEEFKSFVQRLTG  SSVAVVA+S SATGMI    
Subjt:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHP

Query:  DEECVSACTYIPS
        DEE VS C  IPS
Subjt:  DEECVSACTYIPS

OMO68664.1 VQ motif-containing protein [Corchorus olitorius]1.8e-1362.16Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVA
        L+GPRP PL V+ +S+KI KKS+TT+ +   N R     DPV++YLRSPKIIHVRPEEF S VQRLTGK S+ A
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVA

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]2.2e-3074.31Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE 
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC

Query:  VSACTYIPS
         SAC  IPS
Subjt:  VSACTYIPS

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein2.4e-2769.91Show/hide
Query:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHP
        ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK+IHVRPEEFKSFVQRLTG  SSVAVVA+S SATGMI    
Subjt:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHP

Query:  DEECVSACTYIPS
        DEE VS C  IPS
Subjt:  DEECVSACTYIPS

A0A1R3HED5 VQ motif-containing protein8.9e-1462.16Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVA
        L+GPRP PL V+ +S+KI KKS+TT+ +   N R     DPV++YLRSPKIIHVRPEEF S VQRLTGK S+ A
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVA

A0A1R3JJT0 VQ motif-containing protein8.9e-1460.26Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAA
        L+GPRP PL V+ +S+KI KK STT++L+   N R    DPV++YLRSPKIIHVRPEEF S VQRLTGK S+ A  ++
Subjt:  LRGPRPPPLTVNKSSTKIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAA

A0A1S3B975 protein MKS1-like1.0e-3074.31Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE 
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC

Query:  VSACTYIPS
         SAC  IPS
Subjt:  VSACTYIPS

A0A5D3DP92 Protein MKS1-like1.0e-3074.31Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE 
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEEC

Query:  VSACTYIPS
         SAC  IPS
Subjt:  VSACTYIPS

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B3.3e-0535.56Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT
        GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH  P  F + VQRLTG+ S+    ++S S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT

Q8LGD5 Protein MKS12.4e-0844.87Show/hide
Query:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSV
        L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic8.6e-0645.31Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Q9LS54 VQ motif-containing protein 201.7e-0643.33Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.3e-0635.56Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT
        GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH  P  F + VQRLTG+ S+    ++S S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT

AT1G21326.1 VQ motif-containing protein1.2e-0738.89Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT
        GPRP PL V   S KI KK       P P                  PVI+Y  SP+IIH  P  F + VQRLTGK +S +  ++S+S++
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSAT

AT1G68450.1 VQ motif-containing protein6.1e-0745.31Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18360.1 VQ motif-containing protein1.2e-0743.33Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 11.7e-0944.87Show/hide
Query:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSV
        L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGAC
GAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTCCAACGTCTTA
CTGGAAAAGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGATGAGGAATGTGTATCGGCCTGCACTTACATTCCGTCG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGAC
GAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTCCAACGTCTTA
CTGGAAAAGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGATGAGGAATGTGTATCGGCCTGCACTTACATTCCGTCG
TAG
Protein sequenceShow/hide protein sequence
MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEECVSACTYIPS