CuGenDBv2

Gene ID	CmoCh06G005890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Mediator of RNA polymerase II transcription subunit 10
Genome location	Cmo_Chr06:2892326..2893263
RNA-Seq Expression	CmoCh06G005890
Synteny	CmoCh06G005890
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019145 - Mediator complex, subunit Med10

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6577769.1 Mediator of RNA polymerase II transcription subunit 10b, partial [Cucurbita argyrosperma subsp. sororia]

9.3e-21

56.67

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        V+ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

KAG7015809.1 Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma subsp. argyrosperma]

9.3e-21

56.67

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        V+ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

XP_008448559.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo]

6.0e-20

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        ++ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

XP_016900643.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X2 [Cucumis melo]

6.0e-20

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        ++ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

XP_022923485.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata]

9.3e-21

56.67

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        V+ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BJY3 Mediator of RNA polymerase II transcription subunit 10

2.9e-20

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        ++ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

A0A1S4DXE0 Mediator of RNA polymerase II transcription subunit 10

2.9e-20

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        ++ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

A0A5D3CJS3 Mediator of RNA polymerase II transcription subunit 10

2.9e-20

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        ++ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

A0A6J1E6X8 Mediator of RNA polymerase II transcription subunit 10

4.5e-21

56.67

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        V+ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

A0A6J1HLJ2 Mediator of RNA polymerase II transcription subunit 10

4.5e-21

56.67

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDSKQN+NQVINSIQKT+GIL   + T                                    VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTT----------------------------------PVPLGV

Query:  VDFIDAGKNPDEFARDVLNS
        V+ ID GKNPDEF RDVLNS
Subjt:  VDFIDAGKNPDEFARDVLNS

SwissProt top hits

e value

%identity

Alignment

F4HPA7 Mediator of RNA polymerase II transcription subunit 10b

5.9e-10

41.13

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV
        MD  QN S  AG GGS  NG++    ND TS +T  DDSK+N++QVINSI+KT+G+     L+  SFT                               +
Subjt:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV

Query:  PLGVVDFIDAGKNPDEFARDVLNS
        P+ V++ ID GKNPDEF +DVLNS
Subjt:  PLGVVDFIDAGKNPDEFARDVLNS

Q9FHZ2 Mediator of RNA polymerase II transcription subunit 10a

1.8e-06

35.29

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPVPLGV
        MD  QN  + AG G    NGS+  + +A+ +VDDS + +NQ+INS QK + +     L+ +SFT                               VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPVPLGV

Query:  VDFIDAGKNPDEFARDVLN
        ++ ID GKNPDEF +DVLN
Subjt:  VDFIDAGKNPDEFARDVLN

Arabidopsis top hits

e value

%identity

Alignment

AT1G26665.1 Mediator complex, subunit Med10

4.2e-11

41.13

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV
        MD  QN S  AG GGS  NG++    ND TS +T  DDSK+N++QVINSI+KT+G+     L+  SFT                               +
Subjt:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV

Query:  PLGVVDFIDAGKNPDEFARDVLNS
        P+ V++ ID GKNPDEF +DVLNS
Subjt:  PLGVVDFIDAGKNPDEFARDVLNS

AT1G26665.2 Mediator complex, subunit Med10

4.2e-11

41.13

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV
        MD  QN S  AG GGS  NG++    ND TS +T  DDSK+N++QVINSI+KT+G+     L+  SFT                               +
Subjt:  MDLAQNASSAAGTGGSGGNGSV---IND-TSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPV

Query:  PLGVVDFIDAGKNPDEFARDVLNS
        P+ V++ ID GKNPDEF +DVLNS
Subjt:  PLGVVDFIDAGKNPDEFARDVLNS

AT5G41910.1 Mediator complex, subunit Med10

1.3e-07

35.29

Show/hide

Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPVPLGV
        MD  QN  + AG G    NGS+  + +A+ +VDDS + +NQ+INS QK + +     L+ +SFT                               VP+ V
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGI-----LSAASFT-----------------------------TPVPLGV

Query:  VDFIDAGKNPDEFARDVLN
        ++ ID GKNPDEF +DVLN
Subjt:  VDFIDAGKNPDEFARDVLN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCAAAGCA
AAACGTGAACCAAGTAATCAACTCCATACAGAAAACTATGGGTATCCTATCAGCTGCCTCTTTTACAACGCCTGTTCCTCTGGGGGTTGTTGATTTCATTGATGCTGGGA
AGAATCCAGATGAATTTGCAAGGGATGTCTTAAATAGTTGA

mRNA sequence

Show/hide mRNA sequence

AGGTTAACATTCCGCCATTGCTCCCACTTGATTTTTCTCCGATTGAGTTTCTATGTTCTTTAATTTTTAATTCCTTGATTTAAGCGAAATATTGTTCTTCGGTCCATAAT
TTGTGTAATTATGATTTGTTGGGGCGTTTATTGTTAATTTTTGTTTGATTTCGGGAAGCTGTTTGATTGATTTTCTGTTCATTCCTTTGGAGCTATTCAAGTTCAAGCTT
GTTATGATTTTTGTTATGATTTTCGGGATTTTATCAGCGCCGTTTTTGTTAGGGTTCGCGTACTTTGATTTGCGGCATGAAGACTGTAATTCTGATAGATTTGTATGGAA
ATGCATTTCAGAGCTCCAAGGTATTTGGGAAGTGAAAAGAAGTAATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTC
ATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCAAAGCAAAACGTGAACCAAGTAATCAACTCCATACAGAAAACTATGGGTATCCTATCAGCTGCCTCTTTTAC
AACGCCTGTTCCTCTGGGGGTTGTTGATTTCATTGATGCTGGGAAGAATCCAGATGAATTTGCAAGGGATGTCTTAAATAGTTGA

Protein sequence

Show/hide protein sequence

MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSKQNVNQVINSIQKTMGILSAASFTTPVPLGVVDFIDAGKNPDEFARDVLNS

CmoCh06G005890 (gene) of Cucurbita moschata (Rifu) v1 genome