; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G005980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G005980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionshort-chain dehydrogenase TIC 32, chloroplastic-like
Genome locationCmo_Chr06:2952288..2953062
RNA-Seq ExpressionCmoCh06G005980
SyntenyCmoCh06G005980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596684.1 Short-chain dehydrogenase TIC 32 A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.8e-3589.13Show/hide
Query:  MEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ
        MEMTFATN     +SQINGNPRPNSECDVQYPQP FRRR RMSR DKP+QQVRLIFLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ
Subjt:  MEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ

KAG7028219.1 Short-chain dehydrogenase TIC 32, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-6191.97Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI
        MVLDLSSMNFV NFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATN     +SQINGNPRPNSECDVQYPQP FRRR RMSR DKP+QQVRLI
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI

Query:  FLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ
        FLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ
Subjt:  FLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQ

TYK11434.1 short-chain dehydrogenase TIC 32 [Cucumis melo var. makuwa]8.2e-2755.92Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKP----KQQ
        MVLDLSS+N V NFVS FE L+LPLNLL++         ++ E  +E       +DDRN +I+ NPRPNSECDVQ+PQ  FRR  R+S+P+KP    +QQ
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKP----KQQ

Query:  VRLIFLCLRINGGL-IAILILTRSREYDATRAY----------TVQLAHRLQ
        VRLI L L ING L I ILI+ +SREYDATRAY          TVQLAHRLQ
Subjt:  VRLIFLCLRINGGL-IAILILTRSREYDATRAY----------TVQLAHRLQ

XP_022145404.1 short-chain dehydrogenase TIC 32, chloroplastic isoform X4 [Momordica charantia]4.5e-1746.26Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI
        M LDLSS+N V NFVS FE L+LPLNLLIN+AGRFCYE AISEDG+EMTF TNY   +   +N      S     +    F    R+SR           
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI

Query:  FLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ
                        + SREYDATRAY          TVQLAHRLQ
Subjt:  FLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ

XP_022952610.1 short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita moschata]4.1e-2655.94Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI
        MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYR                    +          +        Q R++
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI

Query:  FLC----LRINGGLIAIL--ILTRSREYDATRAYTVQLAHRLQ
         +      R++G +I  L  I   +REYDATRAYTVQLAHRLQ
Subjt:  FLC----LRINGGLIAIL--ILTRSREYDATRAYTVQLAHRLQ

TrEMBL top hitse value%identityAlignment
A0A0A0L3R1 Uncharacterized protein2.5e-2957.62Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQ---QV
        MVLDLSS+N V NFVS FE L+LPLNLL++         ++ E  +E       +DDRN +I+GNPRPNSECDVQ+PQ  FRRR R+S+PDKP+Q   QV
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQ---QV

Query:  RLIFLCLRINGG-LIAILILTRSREYDATRAY----------TVQLAHRLQ
        RLI L L ING  +I ILI+ +SREYDATRAY          TVQLAHRLQ
Subjt:  RLIFLCLRINGG-LIAILILTRSREYDATRAY----------TVQLAHRLQ

A0A4Y1RGU2 NAD(P)-binding Rossmann-fold superfamily protein4.9e-1742.17Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY-------------------RDDRNSQINGNPRPNSECDVQYPQPAF
        M LDLSS+  V NFVS FE L LPLNLLIN+AG+F +E AISEDG+EMTFATNY                   ++DRN       RPN E  V Y +  F
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY-------------------RDDRNSQINGNPRPNSECDVQYPQPAF

Query:  RRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ
         R + +SR DKPK++V                     S +YD TRAY          T +LA RL+
Subjt:  RRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ

A0A5D3CJT3 Short-chain dehydrogenase TIC 324.0e-2755.92Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKP----KQQ
        MVLDLSS+N V NFVS FE L+LPLNLL++         ++ E  +E       +DDRN +I+ NPRPNSECDVQ+PQ  FRR  R+S+P+KP    +QQ
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKP----KQQ

Query:  VRLIFLCLRINGGL-IAILILTRSREYDATRAY----------TVQLAHRLQ
        VRLI L L ING L I ILI+ +SREYDATRAY          TVQLAHRLQ
Subjt:  VRLIFLCLRINGGL-IAILILTRSREYDATRAY----------TVQLAHRLQ

A0A6J1CV51 short-chain dehydrogenase TIC 32, chloroplastic isoform X42.2e-1746.26Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI
        M LDLSS+N V NFVS FE L+LPLNLLIN+AGRFCYE AISEDG+EMTF TNY   +   +N      S     +    F    R+SR           
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI

Query:  FLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ
                        + SREYDATRAY          TVQLAHRLQ
Subjt:  FLCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ

A0A6J1GM95 short-chain dehydrogenase TIC 32, chloroplastic-like2.0e-2655.94Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI
        MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYR                    +          +        Q R++
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLI

Query:  FLC----LRINGGLIAIL--ILTRSREYDATRAYTVQLAHRLQ
         +      R++G +I  L  I   +REYDATRAYTVQLAHRLQ
Subjt:  FLC----LRINGGLIAIL--ILTRSREYDATRAYTVQLAHRLQ

SwissProt top hitse value%identityAlignment
A0A078IS66 Short-chain dehydrogenase TIC 32 A, chloroplastic1.4e-0550Show/hide
Query:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        LDLSS+  V +F+  F  L++PLN+LIN+AG       +SEDG+E  FATN+
Subjt:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

A0A078ISJ6 Short-chain dehydrogenase TIC 32 B, chloroplastic1.4e-0550Show/hide
Query:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        LDLSS+  V +F+  F  L++PLN+LIN+AG       +SEDG+E  FATN+
Subjt:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

A2RVM0 Short-chain dehydrogenase TIC 32, chloroplastic1.1e-0550Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        M LDLSSM  V  F S ++   LPLNLLIN+AG       +S+D +E+ FATN+
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

A6QP05 Dehydrogenase/reductase SDR family member 127.8e-0448.08Show/hide
Query:  VLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATN
        ++DLS    V  FV NF+  H  LN+LIN+AG    +R ++EDG+E  FATN
Subjt:  VLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATN

Q6RVV4 Short-chain dehydrogenase TIC 32, chloroplastic2.0e-0446.15Show/hide
Query:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        LDLSS++ V  F S F     PLN+LIN+AG       +S+D +E+ FATN+
Subjt:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

Arabidopsis top hitse value%identityAlignment
AT1G64590.1 NAD(P)-binding Rossmann-fold superfamily protein2.5e-1362.96Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        M LDLSS+  V  FV +FE L+LPLN+LIN+AG++ ++ A+SEDG+EMTFATNY
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein2.0e-0751.85Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        M LDLSSM  V +F S ++ L LPLNLLIN+AG       +S D +E+ FATN+
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

AT4G23430.3 NAD(P)-binding Rossmann-fold superfamily protein3.5e-0748.33Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS
        M LDLSSM  V  F S ++   LPLNLLIN+AG       +S+D +E+ FATN+ D   S
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS

AT4G24050.1 NAD(P)-binding Rossmann-fold superfamily protein2.9e-1470.37Show/hide
Query:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        M LDLSS+  V NFV++FE L LPLNLLIN+AG+  +E AISEDG+EMTFATNY
Subjt:  MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY

AT5G02540.1 NAD(P)-binding Rossmann-fold superfamily protein1.1e-0855.77Show/hide
Query:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY
        LDLSS+  +  FV  F  LHLPLNLLIN+AG       +SEDG+E+ FATN+
Subjt:  LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTCGATCTAAGTTCTATGAATTTCGTCCCGAACTTCGTTTCCAATTTCGAGTTCTTACATTTGCCTCTTAATCTCCTGATTAACAGTGCCGGCAGATTCTGTTA
CGAACGCGCAATTTCTGAAGACGGAATGGAGATGACGTTCGCTACGAATTATCGAGATGATCGAAACAGCCAAATCAACGGGAATCCAAGGCCGAATAGTGAATGTGACG
TCCAATATCCACAGCCGGCTTTCCGGCGACGTAATCGAATGTCTCGGCCAGATAAGCCAAAGCAACAGGTAAGATTAATTTTCCTTTGCTTGCGTATCAATGGCGGTCTG
ATAGCGATACTGATATTAACTCGCAGCAGAGAGTACGACGCGACACGTGCTTACACCGTCCAACTCGCTCACAGACTTCAGGTTCTTCCTCAATATCAATTGAACGATTT
CACGCTCGACTTTGTTTTTGACGAAATCGGAACAGGAAATGGAGGCAAATGTTACAGTAAACTGTGTTCATCCGCGCGTAGTGAAAACCAAATTAAACAGAGATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTCGATCTAAGTTCTATGAATTTCGTCCCGAACTTCGTTTCCAATTTCGAGTTCTTACATTTGCCTCTTAATCTCCTGATTAACAGTGCCGGCAGATTCTGTTA
CGAACGCGCAATTTCTGAAGACGGAATGGAGATGACGTTCGCTACGAATTATCGAGATGATCGAAACAGCCAAATCAACGGGAATCCAAGGCCGAATAGTGAATGTGACG
TCCAATATCCACAGCCGGCTTTCCGGCGACGTAATCGAATGTCTCGGCCAGATAAGCCAAAGCAACAGGTAAGATTAATTTTCCTTTGCTTGCGTATCAATGGCGGTCTG
ATAGCGATACTGATATTAACTCGCAGCAGAGAGTACGACGCGACACGTGCTTACACCGTCCAACTCGCTCACAGACTTCAGGTTCTTCCTCAATATCAATTGAACGATTT
CACGCTCGACTTTGTTTTTGACGAAATCGGAACAGGAAATGGAGGCAAATGTTACAGTAAACTGTGTTCATCCGCGCGTAGTGAAAACCAAATTAAACAGAGATCGTGA
Protein sequenceShow/hide protein sequence
MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLCLRINGGL
IAILILTRSREYDATRAYTVQLAHRLQVLPQYQLNDFTLDFVFDEIGTGNGGKCYSKLCSSARSENQIKQRS