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CmoCh06G006010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G006010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCmo_Chr06:2959851..2968009
RNA-Seq ExpressionCmoCh06G006010
SyntenyCmoCh06G006010
Gene Ontology termsGO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573766.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

KAG7028221.1 hypothetical protein SDJN02_09401, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-1593.62Show/hide
Query:  VWKSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVWGLSG
        VWKSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLV+G  G
Subjt:  VWKSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVWGLSG

XP_004141655.2 DNA-directed RNA polymerase III subunit 2 [Cucumis sativus]4.5e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

XP_022945803.1 DNA-directed RNA polymerase III subunit 2 isoform X2 [Cucurbita moschata]4.5e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

XP_022966941.1 DNA-directed RNA polymerase III subunit 2 isoform X1 [Cucurbita maxima]4.5e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

TrEMBL top hitse value%identityAlignment
A0A5A7UBS2 DNA-directed RNA polymerase subunit beta2.2e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

A0A6J1G1X8 DNA-directed RNA polymerase subunit beta2.2e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

A0A6J1G207 DNA-directed RNA polymerase subunit beta2.2e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

A0A6J1HQP0 DNA-directed RNA polymerase subunit beta2.2e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

A0A6J1HV90 DNA-directed RNA polymerase subunit beta2.2e-1157.33Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI
        ++S+    G +DLELLSAEELHTPNS LVIFNGR              MRMLRRAG+ GEFV+ FVN+KQ  V I
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGR--------------MRMLRRAGETGEFVNAFVNDKQKDVVI

SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 23.4e-0946.67Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNG--------------RMRMLRRAGETGEFVNAFVNDKQKDVVI
        +V++    G  DLE+LSAEELHTP+S LVI NG               +R LRRAG+ GEFV+ F N+KQ  V +
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNG--------------RMRMLRRAGETGEFVNAFVNDKQKDVVI

Q8L518 Probable choline kinase 21.7e-0875Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        ++PSD  V+KL++DVEKYTLASHL+WGL GIISEHV
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

Q9M9H6 Probable choline kinase 12.3e-0566.67Show/hide
Query:  SDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        SD EVE+L++D E YTLA+H+ WGL GIIS HV
Subjt:  SDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

Q9SZ92 Probable choline kinase 31.5e-0455.56Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        ++  + ++E+L+ D+EKYTLASHL WGL GIIS +V
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

Arabidopsis top hitse value%identityAlignment
AT1G71697.1 choline kinase 11.6e-0666.67Show/hide
Query:  SDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        SD EVE+L++D E YTLA+H+ WGL GIIS HV
Subjt:  SDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

AT1G74320.1 Protein kinase superfamily protein1.2e-0975Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        ++PSD  V+KL++DVEKYTLASHL+WGL GIISEHV
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

AT4G09760.1 Protein kinase superfamily protein1.0e-0555.56Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        ++  + ++E+L+ D+EKYTLASHL WGL GIIS +V
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

AT4G09760.2 Protein kinase superfamily protein1.0e-0555.56Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV
        ++  + ++E+L+ D+EKYTLASHL WGL GIIS +V
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHV

AT5G45140.1 nuclear RNA polymerase C22.4e-1046.67Show/hide
Query:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNG--------------RMRMLRRAGETGEFVNAFVNDKQKDVVI
        +V++    G  DLE+LSAEELHTP+S LVI NG               +R LRRAG+ GEFV+ F N+KQ  V +
Subjt:  VVSIVLLFGCDDLELLSAEELHTPNSLLVIFNG--------------RMRMLRRAGETGEFVNAFVNDKQKDVVI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCATATGAATTTTGAATTGTACATTGTTGTATCGATAGTGCTACTGTTTGGGTGTGACGACTTGGAGCTTCTTTCTGCAGAAGAGCTACATACACCAAATTCACT
TCTTGTTATTTTTAATGGACGTATGAGAATGCTGAGGAGAGCTGGAGAAACTGGCGAGTTTGTCAACGCCTTTGTGAATGACAAGCAGAAAGACGTGGTGATTGGGAGGA
TTCCTATATGCTATGAAAACGTTGCTGTGCTTTACCCCATTTCAGTTGTCTCCAATTGTATAATTCTTCTGGAGTTTTGCAGGTTTTTGGATGTAAGAATTGGCGAGCCT
TCTATGACCGAGAATGCTGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATATGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGA
TGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTGGGGTCTCTCGGGAATAATATCGGAGCATGTAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCATATGAATTTTGAATTGTACATTGTTGTATCGATAGTGCTACTGTTTGGGTGTGACGACTTGGAGCTTCTTTCTGCAGAAGAGCTACATACACCAAATTCACT
TCTTGTTATTTTTAATGGACGTATGAGAATGCTGAGGAGAGCTGGAGAAACTGGCGAGTTTGTCAACGCCTTTGTGAATGACAAGCAGAAAGACGTGGTGATTGGGAGGA
TTCCTATATGCTATGAAAACGTTGCTGTGCTTTACCCCATTTCAGTTGTCTCCAATTGTATAATTCTTCTGGAGTTTTGCAGGTTTTTGGATGTAAGAATTGGCGAGCCT
TCTATGACCGAGAATGCTGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATATGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGA
TGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTGGGGTCTCTCGGGAATAATATCGGAGCATGTAACTTAAGCCTGATTTGTCGTTGTTGCTTCCCAGTAATAAATGC
ATTTGTTACAAGCAGCAGAGAGGCAACAAATAGTAAAACAGTTATTAAGATGGAAAATGAGATGATCTATGTCCAGCTTAATATATTTACCACACCGAAGTGGGTGGGGG
TATGCTTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAATTTCTTCTATGGAACAA
TTGCTCGAGATGAAAGAAGATGTGTTGGTTGTTATCACTCAGTTGACACGAAACAATTGTCAAATAAAAAAGAATTGTTCGAGATGAAACAATTGTTCGATCTTGTTGGA
GTTAATTAACAATTGTTCGAGATGGAAGAGATTCAATATGAAGGATGGATGATGACATGTACCGGGCTAGAGTCTTCAGTTCAAGCTTCTAGGAATGAAGGATCATGAGC
TAGACCAAGACGGTGTCTGCATAGGCAAAGGTTGTGCATGAAATCTGGCTAGAGCCAGGGCAGCAGTATTTTGAAGGAGATCCTTTATCTCATGGTAATTATTTTCTTTC
ACTCATCTTTCTTTAATTCTCAAGTAATACATTAAACTAACAGCACAACAACTTGTTAAACGCAAAAGTAAAGTTAAGAGATTTATTAGAAGGTCGATATAGACAAGGAC
AACAGAATCCTAAAATGTCAAATATCTAACTCGAGAAAAATACCGAT
Protein sequenceShow/hide protein sequence
MFHMNFELYIVVSIVLLFGCDDLELLSAEELHTPNSLLVIFNGRMRMLRRAGETGEFVNAFVNDKQKDVVIGRIPICYENVAVLYPISVVSNCIILLEFCRFLDVRIGEP
SMTENAVWKSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVWGLSGIISEHVT