CuGenDBv2

Gene ID	CmoCh06G006480
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Imidazole glycerol phosphate synthase hisHF, chloroplastic
Genome location	Cmo_Chr06:3260269..3260961
RNA-Seq Expression	CmoCh06G006480
Synteny	CmoCh06G006480
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596728.1 hypothetical protein SDJN03_09908, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-117

99.13

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKC KHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

KAG7028262.1 hypothetical protein SDJN02_09443, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-117

98.7

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKC KHPSKRRR GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

XP_022924447.1 suppressor protein SRP40-like [Cucurbita moschata]

6.8e-119

100

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

XP_023005527.1 vitellogenin-1-like [Cucurbita maxima]

6.6e-114

96.52

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDED+VWKC KHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDS DCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEF RR KEVAEVEEAMRRTLMIRSRSVVVSDSSGRFV+PPVKA+
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

XP_023540514.1 suppressor protein SRP40-like [Cucurbita pepo subsp. pepo]

9.2e-116

98.27

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCV-TTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSR
        MAFYGDEDDVWKC KHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCV TTTTTTTSSSSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSR
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCV-TTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSR

Query:  SLAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA
        SLAAIPFLRSRSRLVSDS+DCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA
Subjt:  SLAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA

Query:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG
        KTWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6G5 Uncharacterized protein

1.8e-96

84.85

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDD+WKC KHPSKRRRIGICPLCLRDRL+TLCPDCANVRPCNCC TT TTTTSSSSSSSSSFSRFSSAD   LGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA
        LAAIPFL  RSR V+DS +DCSSSGNSAR SSFWSIF+S+SK+  +D GR E A EI+FRRR KEVAEVEEAMRR LMIRSRSV V+DS GR VRPPVKA
Subjt:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA

Query:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG
        KTWYFPSPIKAFRQSK+ K VLTERSPLHRG
Subjt:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG

A0A6J1E664 uncharacterized protein LOC111430968

9.0e-101

87.45

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKC KHPSKRRRIGICPLCLRDRL+TLCPDCANVRPCNCC   TTTTTSSSSSSSSSFSRFSSAD+ SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA
        LAAIPFLRSRSR V+DS +DCSSSGNSARASSFWSIFRS++K+S  D GR E A E +F+RR KEVAEVEEAMRRTLMIRSRSV VSDSSGRFVR PVKA
Subjt:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA

Query:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG
        K WYFPSPIKAFRQSK+ KAVLTERSPLHRG
Subjt:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG

A0A6J1E8Z1 suppressor protein SRP40-like

3.3e-119

100

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

A0A6J1HN71 uncharacterized protein LOC111465171

5.3e-101

87.45

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDEDDVWKC KHPSKRRRIGICPLCLRDRL++LCPDCANVRPCNCC   TTTTTSSSSSSSSSFSRFSSAD+ SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA
        LAAIPFLRSRSR V+DS +DCSSSGNSARASSFWSIFRS++K+S  D GR E A E +F+RR KEVAEVEEAMRRTLMIRSRSV VSDSSGRFVR PVKA
Subjt:  LAAIPFLRSRSRLVSDS-EDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKA

Query:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG
        K WYFPSPIKAFRQSK+SKAVLTERSPLHRG
Subjt:  KTWYFPSPIKAFRQSKISKAVLTERSPLHRG

A0A6J1KTD6 vitellogenin-1-like

3.2e-114

96.52

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Query:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS
        MAFYGDED+VWKC KHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADV SLGSVGRLSNLIDGEPAFRRSRS
Subjt:  MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRS

Query:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK
        LAAIPFLRSRSRLVSDS DCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEF RR KEVAEVEEAMRRTLMIRSRSVVVSDSSGRFV+PPVKA+
Subjt:  LAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAK

Query:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG
        TWYFPSPIKAFRQSKISKAVLTERSPLHRG
Subjt:  TWYFPSPIKAFRQSKISKAVLTERSPLHRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G32690.1 unknown protein

2.2e-30

42.55

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Query:  DEDDVWKCLKHPSKRRRI---GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFS---SADVTSLGSVGRLSNLIDGEPAFRRSR
        DED   +C KH SKR      G+CP CL +RL +LCPDCA+  PC+C      + + SSSSSSSSFS F+   S +++ +GSVGR+++LI+ EPAFRRS+
Subjt:  DEDDVWKCLKHPSKRRRI---GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFS---SADVTSLGSVGRLSNLIDGEPAFRRSR

Query:  SLAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPV--
        S+ AIP    +   V DS      G S + SSFW IF         + G T+ A                      +M +SRSV V+   G F   PV  
Subjt:  SLAAIPFLRSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPV--

Query:  --KAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG
          K K W FPSPIK FRQS++SK +  +RSPL+RG
Subjt:  --KAKTWYFPSPIKAFRQSKISKAVLTERSPLHRG

AT2G35200.1 unknown protein

4.8e-22

35.43

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Query:  VW-KCLKHPSKRRRI-GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFL
        VW KC +H  +   + G+CP CL +RL +LCPDCA+  PC+C   T   + SS      SF+R        +GSVGR++NLI+ EPAFRRS S+    F 
Subjt:  VW-KCLKHPSKRRRI-GICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFL

Query:  RSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAKTWYFPSP
         ++   + ++E     G   R    W +FR      G+    T+  A    ++      EV         + S + V S  +G           WYFPSP
Subjt:  RSRSRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAKTWYFPSP

Query:  IKAFRQSKISKAVLTERSPLHRG
        IK FRQS++SK +  +RSPL+RG
Subjt:  IKAFRQSKISKAVLTERSPLHRG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGTTCTATGGCGATGAAGACGACGTATGGAAATGTCTAAAACACCCTTCCAAACGGCGGAGGATCGGAATATGTCCTCTCTGCCTCCGTGACCGCCTCCTCACTCT
CTGCCCTGACTGCGCCAACGTACGTCCTTGCAACTGTTGTGTAACTACCACCACCACCACTACCTCTTCTTCTTCTTCTTCTTCCTCCTCTTTCTCTCGCTTCTCCTCCG
CGGATGTTACCTCTCTCGGATCCGTTGGCCGTCTCTCGAATCTGATTGACGGCGAGCCGGCCTTCCGCCGCTCTCGCTCTCTCGCTGCGATTCCGTTTCTCCGATCGAGA
TCGCGACTCGTTTCAGATTCGGAAGACTGTTCGTCGTCTGGTAATAGTGCTAGAGCGTCGTCGTTTTGGTCGATTTTCAGGTCGAGGAGTAAGAGGAGCGGCCATGACAG
CGGAAGAACCGAGACAGCAGCGGAAATCGAATTCAGGCGGAGAGAGAAGGAGGTAGCGGAAGTTGAAGAGGCGATGAGACGAACGTTGATGATCCGGTCAAGATCAGTTG
TGGTTTCCGATTCTAGCGGGAGATTCGTCCGGCCACCAGTGAAGGCTAAGACGTGGTACTTTCCGAGTCCGATCAAAGCTTTTCGGCAATCGAAGATTTCAAAGGCCGTT
CTCACGGAACGGTCTCCGTTACACAGAGGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAFYGDEDDVWKCLKHPSKRRRIGICPLCLRDRLLTLCPDCANVRPCNCCVTTTTTTTSSSSSSSSSFSRFSSADVTSLGSVGRLSNLIDGEPAFRRSRSLAAIPFLRSR
SRLVSDSEDCSSSGNSARASSFWSIFRSRSKRSGHDSGRTETAAEIEFRRREKEVAEVEEAMRRTLMIRSRSVVVSDSSGRFVRPPVKAKTWYFPSPIKAFRQSKISKAV
LTERSPLHRG

CmoCh06G006480 (gene) of Cucurbita moschata (Rifu) v1 genome