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CmoCh06G007110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTryptophan synthase alpha chain
Genome locationCmo_Chr06:3613738..3615015
RNA-Seq ExpressionCmoCh06G007110
SyntenyCmoCh06G007110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7409588.1 unnamed protein product [Spirodela intermedia]6.7e-1351.72Show/hide
Query:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISV
        MADLIA GL  GCRV R  A PEM GHD++VP+ +  GT RLS  +P    + +T    F  + VM  GPLDE  AM+GDGLI ++V
Subjt:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISV

CAB3485487.1 unnamed protein product [Digitaria exilis]4.5e-0943.27Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM
        ADLI  GL  G       ATP  CGHDM+VPD ML  TRR S  + D + S +  A +FTP +         V   GP DEN A  GDG IP  V + + 
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM

Query:  EATG
         A G
Subjt:  EATG

GER33831.1 protein kinase 2B [Striga asiatica]9.6e-1248.48Show/hide
Query:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISVLAWVMEATGVLG
        MADLIA GL  GC   RRPATPE  G DMEVPD MLKG  R S  K     + + +AI+   + V K GPLDE  AM G G +   + A  +  T V G
Subjt:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISVLAWVMEATGVLG

KAB8096564.1 hypothetical protein EE612_025061 [Oryza sativa]9.0e-1044.23Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM
        ADLI  GL  G       ATP  CGHDM+VPD ML  TRRLS  K D + S +  A +FTP +         V   GP DEN A  GDG +P  V   + 
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM

Query:  EATG
         A G
Subjt:  EATG

KAF3787876.1 hypothetical protein EJ110_NYTH09629 [Nymphaea thermarum]4.5e-0936.07Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKS---------GPLDENEAMRGDG-----LIPISV
        ADL+A GL  GC  F   A+P  CGH MEVP++MLK TRR S       ++ V  A + TP ++            GP DEN A  GDG     + P+ +
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKS---------GPLDENEAMRGDG-----LIPISV

Query:  LAWVMEATGVLGDVTDKVTVDG
        +A+     G+  D+   +  DG
Subjt:  LAWVMEATGVLGDVTDKVTVDG

TrEMBL top hitse value%identityAlignment
A0A0A9DJU9 Uncharacterized protein9.7e-1044.23Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM
        ADLI  GL  G       ATP  CG DM+VPD ML  TRR S  K + + S +  A +FTP +         V K GP DEN A  GDG IP  V A + 
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM

Query:  EATG
         A G
Subjt:  EATG

A0A0P0WDQ8 Os04g0573200 protein4.4e-1044.23Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM
        ADLI  GL  G       ATP  CGHDM+VPD ML  TRRLS  K D + S +  A +FTP +         V   GP DEN A  GDG +P  V   + 
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPAS---------VMKSGPLDENEAMRGDGLIPISVLAWVM

Query:  EATG
         A G
Subjt:  EATG

A0A5A7PMJ8 Protein kinase 2B4.7e-1248.48Show/hide
Query:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISVLAWVMEATGVLG
        MADLIA GL  GC   RRPATPE  G DMEVPD MLKG  R S  K     + + +AI+   + V K GPLDE  AM G G +   + A  +  T V G
Subjt:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISVLAWVMEATGVLG

A0A7I8LK11 Hypothetical protein3.2e-1351.72Show/hide
Query:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISV
        MADLIA GL  GCRV R  A PEM GHD++VP+ +  GT RLS  +P    + +T    F  + VM  GPLDE  AM+GDGLI ++V
Subjt:  MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISV

J3LAL6 Uncharacterized protein6.1e-1240.3Show/hide
Query:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKS---------GPLDENEAMRGDGLIPISVLAWVM
        A+ +A GL  G  V  RP  P  CGHDMEVPDS LK TRRLS  +    ++ V  A   TP +VM           GP DEN+AM G G  P  V   V+
Subjt:  ADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKS---------GPLDENEAMRGDGLIPISVLAWVM

Query:  EATGVLGDVTDKVTVDGTSSNSDHPRRHIAHAPG
           G L     + T    S+N  H RR  A   G
Subjt:  EATGVLGDVTDKVTVDGTSSNSDHPRRHIAHAPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATTTGATAGCGCCAGGACTCCATGTGGGATGCAGAGTCTTTAGAAGGCCTGCAACACCTGAGATGTGTGGGCATGACATGGAAGTGCCGGACTCGATGTTAAA
AGGCACTCGACGTTTATCAAATGGCAAGCCTGATGCTGTTATATCGTTGGTGACAGATGCGATTATATTTACACCCGCCTCTGTGATGAAATCAGGGCCTCTTGATGAAA
ATGAAGCCATGAGAGGCGATGGTTTAATTCCCATCTCTGTGCTTGCATGGGTTATGGAAGCCACGGGTGTTCTGGGCGACGTAACTGACAAAGTCACGGTCGATGGTACT
AGCTCCAACAGTGACCATCCAAGGAGACACATTGCTCACGCTCCCGGGAGACGGGCCGTCATTCCCAGCCGAGCAAACCACAACGATTCCATGCTGAACTGCATGGAACG
CCCCTATCGAAATAGCGTCATGAGCAAACTCTTGAGCTGCCATGCCAAGAGAGGCCGAGAGAACATCCACACCGTCGCTGATAGCGGCTTCGATGCCTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATTTGATAGCGCCAGGACTCCATGTGGGATGCAGAGTCTTTAGAAGGCCTGCAACACCTGAGATGTGTGGGCATGACATGGAAGTGCCGGACTCGATGTTAAA
AGGCACTCGACGTTTATCAAATGGCAAGCCTGATGCTGTTATATCGTTGGTGACAGATGCGATTATATTTACACCCGCCTCTGTGATGAAATCAGGGCCTCTTGATGAAA
ATGAAGCCATGAGAGGCGATGGTTTAATTCCCATCTCTGTGCTTGCATGGGTTATGGAAGCCACGGGTGTTCTGGGCGACGTAACTGACAAAGTCACGGTCGATGGTACT
AGCTCCAACAGTGACCATCCAAGGAGACACATTGCTCACGCTCCCGGGAGACGGGCCGTCATTCCCAGCCGAGCAAACCACAACGATTCCATGCTGAACTGCATGGAACG
CCCCTATCGAAATAGCGTCATGAGCAAACTCTTGAGCTGCCATGCCAAGAGAGGCCGAGAGAACATCCACACCGTCGCTGATAGCGGCTTCGATGCCTGCTAA
Protein sequenceShow/hide protein sequence
MADLIAPGLHVGCRVFRRPATPEMCGHDMEVPDSMLKGTRRLSNGKPDAVISLVTDAIIFTPASVMKSGPLDENEAMRGDGLIPISVLAWVMEATGVLGDVTDKVTVDGT
SSNSDHPRRHIAHAPGRRAVIPSRANHNDSMLNCMERPYRNSVMSKLLSCHAKRGRENIHTVADSGFDAC