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CmoCh06G007120 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007120
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCmo_Chr06:3617334..3620266
RNA-Seq ExpressionCmoCh06G007120
SyntenyCmoCh06G007120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573766.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]8.4e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

KAG6596781.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. sororia]3.9e-0958.67Show/hide
Query:  STILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDR---------MRMLRRAGKIGEFVNVFVNEKQE
        S I+   +  L R  L  L+   + +IKKIVKANDRIESSNDR         MRMLRRAGKIGEF+NVFVNEKQ+
Subjt:  STILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDR---------MRMLRRAGKIGEFVNVFVNEKQE

KAG7012839.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]8.4e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

KAG7028311.1 DNA-directed RNA polymerase III subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-0959.46Show/hide
Query:  STILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDR---------MRMLRRAGKIGEFVNVFVNEKQ
        S I+   +  L R  L  L+   + +IKKIVKANDRIESSNDR         MRMLRRAGKIGEF+NVFVNEKQ
Subjt:  STILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDR---------MRMLRRAGKIGEFVNVFVNEKQ

XP_023541760.1 DNA-directed RNA polymerase III subunit 2 [Cucurbita pepo subsp. pepo]4.9e-0446.58Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+KRF  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

TrEMBL top hitse value%identityAlignment
A0A6J1G1X8 DNA-directed RNA polymerase subunit beta5.3e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

A0A6J1G207 DNA-directed RNA polymerase subunit beta5.3e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

A0A6J1HQP0 DNA-directed RNA polymerase subunit beta5.3e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

A0A6J1HV90 DNA-directed RNA polymerase subunit beta5.3e-0445.21Show/hide
Query:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP
        P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYLETK+K+F  F  P
Subjt:  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G45140.1 nuclear RNA polymerase C22.4e-0455.26Show/hide
Query:  IVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQEC
        I+  + R +   + +R LRRAGKIGEFV+VF NEKQ C
Subjt:  IVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQEC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGCCATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAAAAT
TAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGA
AGCAGGAATGTGCGAAGGAAAAAGCATATACACAAGAACAAGCATTAGAGTATCTTGAGACAAAAATGAAGAGATTCAATCTCTTCCACAAACCCTTCATTGTAAGCCTC
TTCATTATGAAGGATGATGCCATGTACGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGCCATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAAAAT
TAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGA
AGCAGGAATGTGCGAAGGAAAAAGCATATACACAAGAACAAGCATTAGAGTATCTTGAGACAAAAATGAAGAGATTCAATCTCTTCCACAAACCCTTCATTGTAAGCCTC
TTCATTATGAAGGATGATGCCATGTACGGGTAA
Protein sequenceShow/hide protein sequence
MTKSVGTGSKSTILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKPFIVSL
FIMKDDAMYG