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CmoCh06G007470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionE3 ubiquitin-protein ligase
Genome locationCmo_Chr06:3884619..3885663
RNA-Seq ExpressionCmoCh06G007470
SyntenyCmoCh06G007470
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596809.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5196.94Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRKLDD EKFSADLHEPLGGIMTECGTDLPIEH LSQEDAECCIC SAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

KAG7028335.1 E3 ubiquitin-protein ligase [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4893.88Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRKL DAEKFSADLHEPLGGIMTEC TDLPIEH LSQEDAECCICLSAYD GVELRELPCGHHFHCSC DKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

XP_022942890.1 E3 ubiquitin-protein ligase At1g12760-like [Cucurbita moschata]3.7e-53100Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

XP_023005445.1 E3 ubiquitin-protein ligase At1g12760-like [Cucurbita maxima]5.1e-5094.9Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRK+DDAEKFSADLH+PLGGIMTECGTD PIEH LSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

XP_023540887.1 E3 ubiquitin-protein ligase At1g12760-like [Cucurbita pepo subsp. pepo]3.9e-5094.9Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKED+EQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTD PIEH LSQEDAECCICLSAYDDGVEL+ELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

TrEMBL top hitse value%identityAlignment
A0A6J1DFX2 E3 ubiquitin-protein ligase At1g12760-like7.4e-4789.8Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRK+DDAEKFS D+  PLGGIMTECGTD PIE  LSQEDAECCICLSAYDDGVELRELPCGHHFHC+CVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

A0A6J1E9J9 E3 ubiquitin-protein ligase At1g12760-like1.4e-4587.76Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKF FRK+DDAEKFSAD+ EPLGGIM EC TD PIE  LSQEDAECCICLSAY+DGVELRELPCGHHFHC+CVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

A0A6J1FX35 E3 ubiquitin-protein ligase At1g12760-like1.8e-53100Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

A0A6J1HJD3 E3 ubiquitin-protein ligase At1g12760-like2.8e-4688.78Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKF FRK+DDAEKFSAD+ EPLGGIMTEC TD PIE  LSQEDAECCICLSAY+DGVELRELPCGHHFHC+CVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

A0A6J1KXF1 E3 ubiquitin-protein ligase At1g12760-like2.4e-5094.9Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGATKEDVEQLSKFKFRK+DDAEKFSADLH+PLGGIMTECGTD PIEH LSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

SwissProt top hitse value%identityAlignment
Q8GUU2 E3 ubiquitin protein ligase RIE14.5e-1742.57Show/hide
Query:  EGATKEDVEQLSKFKFRKLDDAEKFSAD----LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL
        EG ++ ++  L  +KF+     EK        +  P+ G+       L  E TL  EDA+CCICLS+Y+DG EL  LPC HHFH +C+ KW  + ATCPL
Subjt:  EGATKEDVEQLSKFKFRKLDDAEKFSAD----LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL

Query:  C
        C
Subjt:  C

Q8LDB8 E3 ubiquitin-protein ligase At1g631703.2e-3970.3Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL
        QEGA+KED++QL+KFKFRK+ D  K + D  +     GG+MTECGTD P+EH L  EDAECCICLSAY+D  ELRELPCGHHFHC CVDKW YINATCPL
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL

Query:  C
        C
Subjt:  C

Q93Z92 E3 ubiquitin-protein ligase At4g116804.0e-3464.29Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA+K D++Q+ KF+F K  + EK S        GIMTECGTD PIE +LS EDAECCICL  Y+DGVELRELPC HHFHC+C+DKW +IN+ CPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

Q9LN71 E3 ubiquitin-protein ligase At1g127603.1e-4279.8Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECCICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

Q9SRM0 RING-H2 finger protein ATL665.3e-1044.23Show/hide
Query:  EHTLSQEDAECCICLSAYDDGVELREL-PCGHHFHCSCVDKWPYINATCPLC
        E    +E+ ECCICL  +++G +++ L PC H +HC CVD+W    ++CPLC
Subjt:  EHTLSQEDAECCICLSAYDDGVELREL-PCGHHFHCSCVDKWPYINATCPLC

Arabidopsis top hitse value%identityAlignment
AT1G12760.1 Zinc finger, C3HC4 type (RING finger) family protein2.2e-4379.8Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECCICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

AT1G12760.2 Zinc finger, C3HC4 type (RING finger) family protein2.2e-4379.8Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA+KED+EQL+KFKFRKL DA K + D       GIMTECGTD PIEHTL QEDAECCICLSAY+DG ELRELPCGHHFHCSCVDKW YINATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSAD-LHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

AT1G63170.1 Zinc finger, C3HC4 type (RING finger) family protein2.3e-4070.3Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL
        QEGA+KED++QL+KFKFRK+ D  K + D  +     GG+MTECGTD P+EH L  EDAECCICLSAY+D  ELRELPCGHHFHC CVDKW YINATCPL
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHE---PLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPL

Query:  C
        C
Subjt:  C

AT3G61180.1 RING/U-box superfamily protein4.7e-3060.2Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA  E++E+L KFKF  + ++EK + ++ E  GGIMT   T+   E  L  EDAEC ICL AY+DGVELRELPC HHFH  CVDKW  INATCPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC

AT4G11680.1 Zinc finger, C3HC4 type (RING finger) family protein2.9e-3564.29Show/hide
Query:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC
        QEGA+K D++Q+ KF+F K  + EK S        GIMTECGTD PIE +LS EDAECCICL  Y+DGVELRELPC HHFHC+C+DKW +IN+ CPLC
Subjt:  QEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGCTCGACGATGCCGAGAAATTCTCTGCTGATTTACACGAACCTCTCGGTGG
TATAATGACCGAGTGTGGTACAGATTTACCCATTGAACACACCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGATGATGGCGTCGAGCTACGAG
AGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCCGTATATTAACGCTACATGTCCTCTCTGCAATCCCGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGAAGGAGCAACCAAAGAAGACGTTGAACAGTTGTCGAAATTTAAATTCAGAAAGCTCGACGATGCCGAGAAATTCTCTGCTGATTTACACGAACCTCTCGGTGG
TATAATGACCGAGTGTGGTACAGATTTACCCATTGAACACACCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGATGATGGCGTCGAGCTACGAG
AGCTCCCATGTGGTCACCATTTCCACTGTTCCTGCGTCGATAAGTGGCCGTATATTAACGCTACATGTCCTCTCTGCAATCCCGTCTAA
Protein sequenceShow/hide protein sequence
MQEGATKEDVEQLSKFKFRKLDDAEKFSADLHEPLGGIMTECGTDLPIEHTLSQEDAECCICLSAYDDGVELRELPCGHHFHCSCVDKWPYINATCPLCNPV