CuGenDBv2

Gene ID	CmoCh06G007710
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	General transcription factor IIH subunit 5-like
Genome location	Cmo_Chr06:4009536..4011882
RNA-Seq Expression	CmoCh06G007710
Synteny	CmoCh06G007710
Gene Ontology terms	GO:0006294 - nucleotide-excision repair, preincision complex assembly (biological process) GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0000439 - transcription factor TFIIH core complex (cellular component) GO:0005669 - transcription factor TFIID complex (cellular component) GO:0005675 - transcription factor TFIIH holo complex (cellular component)
InterPro domains	IPR009400 - TFIIH subunit TTDA/Tfb5 IPR035935 - TFB5-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596831.1 General transcription and DNA repair factor IIH subunit TFB5, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-42

98.86

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Query:  AFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        AFSFRCL LPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
Subjt:  AFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

KAG7028360.1 RNA polymerase II transcription factor B subunit 5, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-43

98.88

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Query:  WAFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        WAFSFRCL LPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
Subjt:  WAFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

XP_008448918.1 PREDICTED: RNA polymerase II transcription factor B subunit 5 [Cucumis melo]

1.5e-28

91.43

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

XP_022943513.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita moschata]

1.1e-31

100

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

XP_023539253.1 RNA polymerase II transcription factor B subunit 5 [Cucurbita pepo subsp. pepo]

4.3e-31

98.57

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIR+AMSEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4F5 Uncharacterized protein

1.6e-28

91.43

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKG+FISCDIPM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFR+Q SYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

A0A1S3BK87 RNA polymerase II transcription factor B subunit 5

7.3e-29

91.43

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKG+FISCD+PM QFIINYNASLPASHRFIIHILDNTHMFVQP+VADMIRNA+SEFRDQ SYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

A0A6J1DFN4 RNA polymerase II transcription factor B subunit 5

8.1e-28

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKGLFISCD+PM QFIINYNASLPAS RFIIHILDNTHMFVQP VA MI+NA+SEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

A0A6J1FX17 RNA polymerase II transcription factor B subunit 5

5.4e-32

100

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

A0A6J1L2N1 RNA polymerase II transcription factor B subunit 5 isoform X1

5.4e-32

100

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

SwissProt top hits

e value

%identity

Alignment

Q2T9Z5 General transcription factor IIH subunit 5

5.8e-07

36.36

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY

Q5ZKH0 General transcription factor IIH subunit 5

2.0e-07

39.39

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  LD TH+FV   + + ++  + E  DQNS+
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY

Q6NNM0 General transcription and DNA repair factor IIH subunit TFB5

4.7e-25

72.86

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQP+V  MIR+A+S+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

Q6ZYL4 General transcription factor IIH subunit 5

5.8e-07

36.36

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY
        MVN +KG+ I CD  M QF++  + S     +FII  +D+TH+FV   + ++++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY

Q8K2X8 General transcription factor IIH subunit 5

1.3e-06

34.85

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY
        MVN +KG+ I CD  M QF++  + +     +FII  +D+TH+FV   + ++++  + E  DQN++
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSY

Arabidopsis top hits

e value

%identity

Alignment

AT1G12400.1 Nucleotide excision repair, TFIIH, subunit TTDA

3.4e-26

72.86

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT
        MVNAIKG+F+SCDIPM QFI+N N S+P S +FIIH+LD+TH+FVQP+V  MIR+A+S+FRDQNSYEKPT
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

AT1G62886.1 Nucleotide excision repair, TFIIH, subunit TTDA

3.4e-18

61.43

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Query:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHI--LDNTHMFVQPNVADMIRNAMSEFRDQNSYEK
        MVN+IKG+FISCD+PM QFI + N SLPAS +FII +  LD T MFV+P   +MIR+A+ +FRD+NSY K
Subjt:  MVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHI--LDNTHMFVQPNVADMIRNAMSEFRDQNSYEK

Sequences

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CDS sequence

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mRNA sequence

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ATGCCACTGATTACGCCGATGCCTTATCTCGATCTAGGGTTTTGCGATGTTCTACTATGGGCTTTCAGTTTTCGTTGCTTGCGGCTTCCCTTTGAGCGTGGACGTTTTGA
CATCATGGTTAATGCCATTAAAGGACTATTCATCTCCTGTGACATACCTATGGGACAATTTATCATCAATTACAATGCATCCCTACCTGCATCCCATAGATTTATCATCC
ATATTTTGGACAATACTCACATGTTTGTGCAACCCAATGTAGCTGATATGATTCGAAACGCCATGTCTGAATTTCGAGATCAGAATTCGTATGAGAAGCCTACTTGAATC
CCCCTGCCCCCCACTGTGTTGGTAGTGAAGGACTTTGAAGTTATAGATTTTACTTCTAAAACTTATCTTTCGTCCCAACTGTTTCACTTGTATTAGTGCAATATATCTCA
ACAAACTTGAAGATCTGGAATGGTGGAGACTATGAGCTGCCAGTAATTCTCAACCTAAAAATGACTGATTTTGTTTTCGTAAGATATTTGTGAATATTTGATCAGTTTGT
GCGTACTTAGACTATTTTTAAATAACAATTGCTTGGCATACTACATTTGGTCATTAAGAAAATATGTAATGTTATATTATAGATAGATAGATGATCATGACTTGCACTCG
TTTTCTCGAGTCTTCTATTAGTTACTATTAGTCATTAGGTTAACCTAGAAGGGACACTAAATTTGGTAGCTAGTTTTTGCTTTGTTTTTCTTGTTAAATGAGTCATCATG
TGCTAACTTGTGTTGATAAATGAGTTTTTG

Protein sequence

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MPLITPMPYLDLGFCDVLLWAFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT

CmoCh06G007710 (gene) of Cucurbita moschata (Rifu) v1 genome