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CmoCh06G007840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein YABBY 4-like
Genome locationCmo_Chr06:4096291..4098688
RNA-Seq ExpressionCmoCh06G007840
SyntenyCmoCh06G007840
Gene Ontology termsGO:0009944 - polarity specification of adaxial/abaxial axis (biological process)
GO:0010154 - fruit development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:1902183 - regulation of shoot apical meristem development (biological process)
GO:2000024 - regulation of leaf development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596843.1 Protein YABBY 4, partial [Cucurbita argyrosperma subsp. sororia]2.6e-6799.22Show/hide
Query:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
        MRGGMLLPSPNH HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
Subjt:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE

Query:  AFSAAAKNWAHFPHIHNFGVPPNSNNNT
        AFSAAAKNWAHFPHIHNFGVPPNSNNNT
Subjt:  AFSAAAKNWAHFPHIHNFGVPPNSNNNT

XP_022947097.1 protein YABBY 4-like, partial [Cucurbita moschata]8.0e-69100Show/hide
Query:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
        MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
Subjt:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE

Query:  AFSAAAKNWAHFPHIHNFGVPPNSNNNTP
        AFSAAAKNWAHFPHIHNFGVPPNSNNNTP
Subjt:  AFSAAAKNWAHFPHIHNFGVPPNSNNNTP

XP_023005560.1 protein YABBY 4-like isoform X2 [Cucurbita maxima]3.4e-5985.61Show/hide
Query:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
        MRGGMLLPSPNHFH      T FF+PNAHNFLEEISNPNPNF MNQTDGIDL M TRVGNDVPR P +INRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
Subjt:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD

Query:  ISHREAFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP
        ISHREAFSAAAKNWAHFPHIHNFGVPP     N+NNNTP
Subjt:  ISHREAFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP

XP_023539156.1 axial regulator YABBY 3-like isoform X1 [Cucurbita pepo subsp. pepo]1.5e-6291.11Show/hide
Query:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
        MRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVMNQTDGIDL MATRVGN+VPRPPPSIN+PAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
Subjt:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE

Query:  AFSAAAKN-WAHFPHIHNFGVPP-----NSNNNTP
        AFSAAAKN WAHFPHIHNFGVPP     N+ NNTP
Subjt:  AFSAAAKN-WAHFPHIHNFGVPP-----NSNNNTP

XP_023539158.1 axial regulator YABBY 3-like isoform X2 [Cucurbita pepo subsp. pepo]6.0e-6491.79Show/hide
Query:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
        MRGGMLLPSPNHFHHTAFFSPNAHNFLEEIS+PNPNFVMNQTDGIDL MATRVGN+VPRPPPSIN+PAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
Subjt:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE

Query:  AFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP
        AFSAAAKNWAHFPHIHNFGVPP     N+ NNTP
Subjt:  AFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP

TrEMBL top hitse value%identityAlignment
A0A0A0L1N8 Uncharacterized protein1.7e-4883.19Show/hide
Query:  MRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDI
        M GGMLLPSP+ F    H T F SPN HNFLEEISNPNPNF+MNQT+GIDL MATRV NDVPR PP+INRP EK+QRVPSAYNRFIK+EIQRIKAANPDI
Subjt:  MRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDI

Query:  SHREAFSAAAKNWAHFPHI
        SHREAFSAAAKNWAHFPHI
Subjt:  SHREAFSAAAKNWAHFPHI

A0A1S4DXY3 protein YABBY 4-like3.4e-4984.03Show/hide
Query:  MRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDI
        M GGMLLPSP+ F    H T FFSPN HNFLEEISNPNPNF+MNQT+GIDL MATRV NDVPR PP+INRP EK+QRVPSAYNRFIK+EIQRIKAANPDI
Subjt:  MRGGMLLPSPNHF----HHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDI

Query:  SHREAFSAAAKNWAHFPHI
        SHREAFSAAAKNWAHFPHI
Subjt:  SHREAFSAAAKNWAHFPHI

A0A6J1G5H6 protein YABBY 4-like3.9e-69100Show/hide
Query:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
        MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE
Subjt:  MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHRE

Query:  AFSAAAKNWAHFPHIHNFGVPPNSNNNTP
        AFSAAAKNWAHFPHIHNFGVPPNSNNNTP
Subjt:  AFSAAAKNWAHFPHIHNFGVPPNSNNNTP

A0A6J1KXR1 protein YABBY 4-like isoform X21.6e-5985.61Show/hide
Query:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
        MRGGMLLPSPNHFH      T FF+PNAHNFLEEISNPNPNF MNQTDGIDL M TRVGNDVPR P +INRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
Subjt:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD

Query:  ISHREAFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP
        ISHREAFSAAAKNWAHFPHIHNFGVPP     N+NNNTP
Subjt:  ISHREAFSAAAKNWAHFPHIHNFGVPP-----NSNNNTP

A0A6J1KZK7 protein YABBY 4-like isoform X14.0e-5885Show/hide
Query:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
        MRGGMLLPSPNHFH      T FF+PNAHNFLEEISNPNPNF MNQTDGIDL M TRVGNDVPR P +INRPAEKKQRVPSAYNRFIKEEIQRIKAANPD
Subjt:  MRGGMLLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPD

Query:  ISHREAFSAAAKN-WAHFPHIHNFGVPP-----NSNNNTP
        ISHREAFSAAAKN WAHFPHIHNFGVPP     N+NNNTP
Subjt:  ISHREAFSAAAKN-WAHFPHIHNFGVPP-----NSNNNTP

SwissProt top hitse value%identityAlignment
A2X7Q3 Protein YABBY 43.3e-2546Show/hide
Query:  GMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN----------------------DVPR-PPPSINRPAEKKQR
        G+LLP+P        HF  +     + H  L+E++   P+ +M Q     L+  T   +                      ++P+  P S NRP EK+QR
Subjt:  GMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN----------------------DVPR-PPPSINRPAEKKQR

Query:  VPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN
        VPSAYNRFIK+EIQRIKA NPDISHREAFSAAAKNWAHFPHIH FG+ P+
Subjt:  VPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN

O22152 Axial regulator YABBY 11.9e-2553.85Show/hide
Query:  LLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANP
        +LP+ N        H+ F   N  + LEE+ +   N    +MNQ    + I   M     +++P+ PP +NRP EK+QRVPSAYNRFIKEEIQRIKA NP
Subjt:  LLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANP

Query:  DISHREAFSAAAKNWAHFPHIHNFGVPPNS
        DISHREAFSAAAKNWAHFPHIH FG+ P++
Subjt:  DISHREAFSAAAKNWAHFPHIHNFGVPPNS

Q6H668 Protein YABBY 43.3e-2546Show/hide
Query:  GMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN----------------------DVPR-PPPSINRPAEKKQR
        G+LLP+P        HF  +     + H  L+E++   P+ +M Q     L+  T   +                      ++P+  P S NRP EK+QR
Subjt:  GMLLPSPN-------HFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGN----------------------DVPR-PPPSINRPAEKKQR

Query:  VPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN
        VPSAYNRFIK+EIQRIKA NPDISHREAFSAAAKNWAHFPHIH FG+ P+
Subjt:  VPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN

Q8L556 Protein YABBY 31.6e-2448.98Show/hide
Query:  PSPNHFHHTAFFS----PNAHNFLEEISNPN-PNFVMNQTDGIDLAMATRV---GNDVPR-----PPPS------------------INRPAEKKQRVPS
        P   HF H+   +    P+ H+ L+EIS  N P  ++ +  G+   MA+      N+ P      PPP+                  INRP EK+QRVPS
Subjt:  PSPNHFHHTAFFS----PNAHNFLEEISNPN-PNFVMNQTDGIDLAMATRV---GNDVPR-----PPPS------------------INRPAEKKQRVPS

Query:  AYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN
        AYNRFIK+EIQRIKA NPDISHREAFSAAAKNWAHFPHIH FG+ P+
Subjt:  AYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPN

Q9XFB1 Axial regulator YABBY 36.1e-2754.48Show/hide
Query:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI
        +LLPS ++  H+       P   N LEE+ +   N  MN               L MATR G  V      PRPPP+ NRP EK+QRVPSAYNRFIKEEI
Subjt:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI

Query:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN
        QRIKA NPDISHREAFSAAAKNWAHFPHIH FG+    PP    N
Subjt:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein5.4e-2368.83Show/hide
Query:  MATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPNSN
        ++  +  + PR PP   RP EK+QRVPSAYNRFIKEEIQRIKA NP+ISHREAFS AAKNWAHFPHIH FG+  + N
Subjt:  MATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWAHFPHIHNFGVPPNSN

AT2G26580.1 plant-specific transcription factor YABBY family protein7.1e-2351.69Show/hide
Query:  HHTAFFSPNAHNFLEEISNPN---PNFVM---NQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAK
        H T  +S N    L+ +S PN    N+ +     +      + +R+          +NRP EK+QRVPSAYN+FIKEEIQRIKA NPDISHREAFS AAK
Subjt:  HHTAFFSPNAHNFLEEISNPN---PNFVM---NQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAK

Query:  NWAHFPHIHNFGVPPNSN
        NWAHFPHIH FG+   SN
Subjt:  NWAHFPHIHNFGVPPNSN

AT2G45190.1 Plant-specific transcription factor YABBY family protein1.4e-2653.85Show/hide
Query:  LLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANP
        +LP+ N        H+ F   N  + LEE+ +   N    +MNQ    + I   M     +++P+ PP +NRP EK+QRVPSAYNRFIKEEIQRIKA NP
Subjt:  LLPSPNHFH-----HTAFFSPNAHNFLEEISNPNPN---FVMNQ---TDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANP

Query:  DISHREAFSAAAKNWAHFPHIHNFGVPPNS
        DISHREAFSAAAKNWAHFPHIH FG+ P++
Subjt:  DISHREAFSAAAKNWAHFPHIHNFGVPPNS

AT4G00180.1 Plant-specific transcription factor YABBY family protein4.3e-2854.48Show/hide
Query:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI
        +LLPS ++  H+       P   N LEE+ +   N  MN               L MATR G  V      PRPPP+ NRP EK+QRVPSAYNRFIKEEI
Subjt:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI

Query:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN
        QRIKA NPDISHREAFSAAAKNWAHFPHIH FG+    PP    N
Subjt:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN

AT4G00180.2 Plant-specific transcription factor YABBY family protein4.3e-2854.48Show/hide
Query:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI
        +LLPS ++  H+       P   N LEE+ +   N  MN               L MATR G  V      PRPPP+ NRP EK+QRVPSAYNRFIKEEI
Subjt:  MLLPSPNHFHHTAF---FSPNAHNFLEEISNPNPNFVMNQT---------DGIDLAMATRVGNDV------PRPPPSINRPAEKKQRVPSAYNRFIKEEI

Query:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN
        QRIKA NPDISHREAFSAAAKNWAHFPHIH FG+    PP    N
Subjt:  QRIKAANPDISHREAFSAAAKNWAHFPHIHNFGV----PPNSNNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAATGCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTT
TGTGATGAACCAAACCGATGGAATTGATTTGGCGATGGCAACTCGGGTAGGAAACGATGTTCCAAGGCCACCCCCAAGCATAAATAGACCTGCAGAAAAGAAACAGAGAG
TACCCTCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATTGGGCC
CACTTCCCTCACATTCACAATTTTGGTGTTCCTCCCAACAGCAACAACAACACACCCTAG
mRNA sequenceShow/hide mRNA sequence
TGAATGAAAAGACGAGGAGAATTGTAATAACCATAAAAAACAAAACAAAAACAAAAAAGAAACGCATAATTTGTTAAATATGTGTCTTTTTCCCTTCCCACCACCTTCTC
CCAACATCCTCCTCCTCCTCCTTCCTCCGACCACCTTTGCTATGTCCATTGCAACGTTTGCGACACGGTTTTGGCGGTGAGTGTTCCTTGTGCTAGTTTGTTCAAAACGG
TGACCGTCCGTTGCGGCCACTGCGCCAATCTTCTACCGGTCAACATGCGTGGTGGCATGCTTCTCCCTTCTCCCAATCACTTTCATCATACTGCTTTCTTCTCTCCCAAT
GCTCACAATTTTCTGGAAGAGATCTCAAATCCAAATCCAAATTTTGTGATGAACCAAACCGATGGAATTGATTTGGCGATGGCAACTCGGGTAGGAAACGATGTTCCAAG
GCCACCCCCAAGCATAAATAGACCTGCAGAAAAGAAACAGAGAGTACCCTCTGCATACAACCGATTCATCAAGGAGGAGATCCAACGCATCAAGGCTGCCAATCCAGACA
TCTCTCACAGAGAAGCCTTCAGCGCTGCAGCTAAGAATTGGGCCCACTTCCCTCACATTCACAATTTTGGTGTTCCTCCCAACAGCAACAACAACACACCCTAGCTGGCT
TCTTCAACAGGAAGAAGATTTTATGTTGAAAGATGATCTGACTTTTGGGTTCAACAAACATGGGAGACCTCGTCAACGAGTAAGATGAAATGAACATCAACTTAGGAAAT
ATGGACCAGGATGACTTACGTGATGTATGATGTGTAATTTTTTTTGGACCAACCCAATTTTTAAAAGTTCGATGGGATAAAATTATGATTATGAACAAATTTTGATTCGC
AATGACTTATCATTTAGTCGGGATGGAATTTAGGC
Protein sequenceShow/hide protein sequence
MRGGMLLPSPNHFHHTAFFSPNAHNFLEEISNPNPNFVMNQTDGIDLAMATRVGNDVPRPPPSINRPAEKKQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNWA
HFPHIHNFGVPPNSNNNTP