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CmoCh06G007900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhenylalanine--tRNA ligase beta subunit
Genome locationCmo_Chr06:4167705..4169652
RNA-Seq ExpressionCmoCh06G007900
SyntenyCmoCh06G007900
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER28030.1 phenylalanine--tRNA ligase beta subunit, partial [Striga asiatica]3.9e-1273.58Show/hide
Query:  NHGLL--PVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
        +HGL   P TLCT +T+ EL KNPNDSVL+ SPVLIVFIP GHSL+KKSSCPM
Subjt:  NHGLL--PVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
OAY81728.1 hypothetical protein ACMD2_20683 [Ananas comosus]1.8e-1280.85Show/hide
Query:  LPVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
        LPVTLCTI T  EL KNP++SVLRN+PVL+VFIPFGHS KKKSSCPM
Subjt:  LPVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
TrEMBL top hitse value%identityAlignment
A0A0A9GLG7 Uncharacterized protein7.0e-0770Show/hide
Query:  IVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
        +VT   LKKNP+  VLRNSPVL+VF+P GHS +KKSSCPM
Subjt:  IVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
A0A199VXL9 Uncharacterized protein8.5e-1380.85Show/hide
Query:  LPVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
        LPVTLCTI T  EL KNP++SVLRN+PVL+VFIPFGHS KKKSSCPM
Subjt:  LPVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
A0A5A7P5H1 Phenylalanine--tRNA ligase beta subunit (Fragment)1.9e-1273.58Show/hide
Query:  NHGLL--PVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
        +HGL   P TLCT +T+ EL KNPNDSVL+ SPVLIVFIP GHSL+KKSSCPM
Subjt:  NHGLL--PVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGCTTCTTCCTTCCATGGTCTTGGAATTTGCCAGATAATGCAGCAGTAGCTAGAAAACCCAACCATGGCTTGTTGCCTGTTACTTTGTGCACAATTGTCACCAA
GAAAGAGCTCAAGAAAAACCCTAATGATAGTGTGCTTAGAAACAGCCCTGTGCTCATTGTTTTCATCCCTTTTGGACACTCCCTTAAGAAGAAGTCTAGCTGCCCAATGT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGCTTCTTCCTTCCATGGTCTTGGAATTTGCCAGATAATGCAGCAGTAGCTAGAAAACCCAACCATGGCTTGTTGCCTGTTACTTTGTGCACAATTGTCACCAA
GAAAGAGCTCAAGAAAAACCCTAATGATAGTGTGCTTAGAAACAGCCCTGTGCTCATTGTTTTCATCCCTTTTGGACACTCCCTTAAGAAGAAGTCTAGCTGCCCAATGT
AA
Protein sequenceShow/hide protein sequence
MGCFFLPWSWNLPDNAAVARKPNHGLLPVTLCTIVTKKELKKNPNDSVLRNSPVLIVFIPFGHSLKKKSSCPM