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CmoCh06G007980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G007980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationCmo_Chr06:4255302..4256296
RNA-Seq ExpressionCmoCh06G007980
SyntenyCmoCh06G007980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596855.1 Root meristem growth factor 6, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3996.74Show/hide
Query:  MISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        MISPGFRTNQLE+SLDESRSNDVSSMENVGIEILKGMKKLRRLAME PVRD DRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  MISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-6096.9Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVN
        MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLE CMISPGFRTNQLE+SLDESRSNDVSSMENVGIEILKGMKKLRRLAME PVRD DRDKDIDKVVN
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]2.1e-5690.84Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDR--DKDIDKV
        MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLESCMISPGFR +QL+RSLD+S+SN+VSS+ENVGIEILKGMKKLRRLAME PVRDRDR  DKDIDKV
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDR--DKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]1.1e-6096.12Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVN
        MPMPTS FL+LLFLSTFLHACDARLLKLCHSSRLESC+ISPGFRTNQLERSLDES+SNDVSSMENVGIEILKGMKKLRRLAME PVRDRDRDKDIDKVVN
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]4.3e-2257.36Show/hide
Query:  LFLSLLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRTNQLERSLDESRSNDVSSME-NVGIEILKGMKKL-RRLAMERPVRDRDRDKDIDKVVN
        LFL LL  S+ LHAC+AR L+   S    SR+E   IS G   +Q ERS +ES S+ +S  E  VGIE+LKGMKK   RL ME P++        +KV+N
Subjt:  LFLSLLFLSTFLHACDARLLKLCHS----SRLESCMISPGFRTNQLERSLDESRSNDVSSME-NVGIEILKGMKKL-RRLAMERPVRDRDRDKDIDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        S+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein4.5e-1749.64Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCM-----ISPGFRT--NQLERSLDESRSNDV-SSMEN-VGIEILKGMKK-LRRLAMERPVRDRD
        M MP   FL LLF S+ LHACDA  L+   SS   S +     +S G  +  +  E S D++ ++++  + EN +GIE+LKGMK+   RL ME P++   
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCM-----ISPGFRT--NQLERSLDESRSNDV-SSMEN-VGIEILKGMKK-LRRLAMERPVRDRD

Query:  RDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
             +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  RDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A438K320 Uncharacterized protein8.0e-0637.01Show/hide
Query:  SLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGF-RTNQLER-SLDESRSNDVSSMENV-GIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVNSE
        S  L LL LS  +HAC+AR L +      E  ++S      +Q+ + SL       + + E +   +IL G K+  RL +           D+++ V+S+
Subjt:  SLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGF-RTNQLER-SLDESRSNDVSSMENV-GIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVNSE

Query:  ENEVGEDMVVMDYAQPHRKPPIHNQKP
        E ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  ENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1DKL1 uncharacterized protein LOC1110213961.7e-1953.38Show/hide
Query:  MPTSLFLSLLFLSTFLHACDA-RLLKLCHSSRLESCM-----ISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDID
        M T   L +L LST LHACDA   L+L   S   S +     I   FRT+Q ERSL+++  + VSS   +GI ILKGMKK +RLAME  ++++      +
Subjt:  MPTSLFLSLLFLSTFLHACDA-RLLKLCHSSRLESCM-----ISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDID

Query:  KVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        K+++ EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1KZM9 uncharacterized protein LOC1114985219.9e-5790.84Show/hide
Query:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDR--DKDIDKV
        MPMPTSLFL+LLFLSTFLHACDARLLKLCHSSRLESCMISPGFR +QL+RSLD+S+SN+VSS+ENVGIEILKGMKKLRRLAME PVRDRDR  DKDIDKV
Subjt:  MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDR--DKDIDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

U5GMJ2 Uncharacterized protein1.0e-0569.44Show/hide
Query:  DIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        D ++ V SEEN++ ED+ VMDYAQPHRKPPIHN+KP
Subjt:  DIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.9e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGCCAACTTCTTTGTTCCTCTCTCTCCTATTCTTGTCGACTTTTTTGCATGCATGCGATGCTCGTCTTCTTAAATTATGCCACAGCTCGAGACTCGAATCGTG
TATGATCTCTCCAGGGTTTCGAACGAATCAACTCGAGAGAAGTTTGGACGAAAGCAGAAGTAACGACGTTTCTTCCATGGAGAATGTTGGGATTGAAATATTGAAGGGAA
TGAAGAAGCTTAGAAGGTTGGCAATGGAGCGTCCAGTGAGAGACAGAGACAGAGACAAAGACATAGACAAAGTGGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATG
GTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
AACAAAACCCTTCTTCTCTATTTCTCTTTCCATTTCCATGCCCATGCCAACTTCTTTGTTCCTCTCTCTCCTATTCTTGTCGACTTTTTTGCATGCATGCGATGCTCGTC
TTCTTAAATTATGCCACAGCTCGAGACTCGAATCGTGTATGATCTCTCCAGGGTTTCGAACGAATCAACTCGAGAGAAGTTTGGACGAAAGCAGAAGTAACGACGTTTCT
TCCATGGAGAATGTTGGGATTGAAATATTGAAGGGAATGAAGAAGCTTAGAAGGTTGGCAATGGAGCGTCCAGTGAGAGACAGAGACAGAGACAAAGACATAGACAAAGT
GGTGAACTCCGAGGAAAACGAGGTTGGAGAAGACATGGTCGTGATGGATTATGCACAGCCCCACAGGAAACCTCCTATTCACAATCAAAAACCCTAGCTCACAATTTAAT
ATGATCTCTTCCAAATTTCCTATGATGTTCAAAATATGTTCCAAAAATCAATGTATTGTATCTAAGGGTTTACTATATTCAAGATTTTTGTGTTAAACAAAAGCATGCAT
TAAAGATATTTTTGTATGATCAATTGGAT
Protein sequenceShow/hide protein sequence
MPMPTSLFLSLLFLSTFLHACDARLLKLCHSSRLESCMISPGFRTNQLERSLDESRSNDVSSMENVGIEILKGMKKLRRLAMERPVRDRDRDKDIDKVVNSEENEVGEDM
VVMDYAQPHRKPPIHNQKP