CuGenDBv2

Gene ID	CmoCh06G008370
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Genome location	Cmo_Chr06:4609847..4616617
RNA-Seq Expression	CmoCh06G008370
Synteny	CmoCh06G008370
Gene Ontology terms	GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0041046.1 uncharacterized protein E6C27_scaffold477G00170 [Cucumis melo var. makuwa]

5.2e-125

67.82

Show/hide

Query:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV
        SSMALFSP  HLSTLS S  H   FS  PFSSLRTR   S SSSSLFTIRA A+                P   K     +ESL GTNG++AAAEE VEV
Subjt:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV

Query:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG
        V+KFED KW+NGTWDLNQF+K+GS DWD+VID+EARRRKW+E N ESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNGRAAMVGFFMAYFVDSL+GVG
Subjt:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG

Query:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSFSKSNTFLIAQENPKSLILKLHNVLYVEHYKCMKACIIDAKVSRENKVLVSVYTERQEP
        +VGQMGNFFCKTLLFVAVVGV+LIR+NEDIETLKKLIDET+F         Q+   S   K+          C     I+A VS+ENKVLV+VY+E+QEP
Subjt:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSFSKSNTFLIAQENPKSLILKLHNVLYVEHYKCMKACIIDAKVSRENKVLVSVYTERQEP

Query:  RVAVNRFQRDDGVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISVTNKQPIQRNVAIN
        R+ VNR+QR + VNK VRNQWK++ ANKGYNRRTELLKYSQRLRKSA+SPASPY+ TPEPI + NKQPI R++AIN
Subjt:  RVAVNRFQRDDGVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISVTNKQPIQRNVAIN

KAG6596887.1 Light-harvesting complex-like protein 3 isotype 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.5e-113

96.43

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRS S SSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLN   AMVGFFMAYFVDSLSGVGVVG+MGNFFCKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVV IR+NEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

KAG7030162.1 Light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-116

97.77

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Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRS S SSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVG+MGNFFCKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVV IR+NEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

XP_022934837.1 light-harvesting complex-like protein 3 isotype 2, chloroplastic [Cucurbita moschata]

2.5e-119

100

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Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVVLIRENEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

XP_023539962.1 light-harvesting complex-like protein 3 isotype 2, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]

2.7e-113

96.43

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMAL SPP HLSTLSSSL +RNSFSSIPFSSLRTRRSPSSSSLFTIRAAA+PEPAKSVTEEQESL GTNGAMA AEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG+VGQMGNFFCKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVVLIRENEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5D8 Uncharacterized protein

1.9e-88

74.09

Show/hide

Query:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-SPSSSSLFTIRAAA----------------------EPEPAKSVTEEQESLPGTNGAMAAAE
        SSMALFSP  HLST S S  H   FS  PFSSLRTR  S SSSSLFTIRA A                      +PEPAK   EEQESL GTNG++AAAE
Subjt:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-SPSSSSLFTIRAAA----------------------EPEPAKSVTEEQESLPGTNGAMAAAE

Query:  E-VEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDS
        E VEVV+KFED KW+NGTWDLNQF+K+GS DWD+VID+EARRRKW+E N ESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNGRAAMVGFFMAYFVDS
Subjt:  E-VEVVTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDS

Query:  LSGVGVVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSF
        L+GVG+VGQMGNFFCKTLLFVAVVGV+LIR+NEDIETLKKLIDET+F
Subjt:  LSGVGVVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSF

A0A1S3BLD8 uncharacterized protein LOC103490842

1.3e-86

73.55

Show/hide

Query:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV
        SSMALFSP  HLSTLS S  H   FS  PFSSLRTR   S SSSSLFTIRA A+                P   K     +ESL GTNG++AAAEE VEV
Subjt:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV

Query:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG
        V+KFED KW+NGTWDLNQF+K+GS DWD+VID+EARRRKW+E N ESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNGRAAMVGFFMAYFVDSL+GVG
Subjt:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG

Query:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSF
        +VGQMGNFFCKTLLFVAVVGV+LIR+NEDIETLKKLIDET+F
Subjt:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSF

A0A5A7TG76 Uncharacterized protein

2.5e-125

67.82

Show/hide

Query:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV
        SSMALFSP  HLSTLS S  H   FS  PFSSLRTR   S SSSSLFTIRA A+                P   K     +ESL GTNG++AAAEE VEV
Subjt:  SSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR--SPSSSSLFTIRAAAE----------------PEPAKSVTEEQESLPGTNGAMAAAEE-VEV

Query:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG
        V+KFED KW+NGTWDLNQF+K+GS DWD+VID+EARRRKW+E N ESSSNEDPVVF TSI+PWWAWIKRYHLPEAE LNGRAAMVGFFMAYFVDSL+GVG
Subjt:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG

Query:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSFSKSNTFLIAQENPKSLILKLHNVLYVEHYKCMKACIIDAKVSRENKVLVSVYTERQEP
        +VGQMGNFFCKTLLFVAVVGV+LIR+NEDIETLKKLIDET+F         Q+   S   K+          C     I+A VS+ENKVLV+VY+E+QEP
Subjt:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETSFSKSNTFLIAQENPKSLILKLHNVLYVEHYKCMKACIIDAKVSRENKVLVSVYTERQEP

Query:  RVAVNRFQRDDGVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISVTNKQPIQRNVAIN
        R+ VNR+QR + VNK VRNQWK++ ANKGYNRRTELLKYSQRLRKSA+SPASPY+ TPEPI + NKQPI R++AIN
Subjt:  RVAVNRFQRDDGVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSAQSPASPYLPTPEPISVTNKQPIQRNVAIN

A0A6J1F3X0 light-harvesting complex-like protein 3 isotype 2, chloroplastic

1.2e-119

100

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVVLIRENEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

A0A6J1KTD1 light-harvesting complex-like protein 3 isotype 2, chloroplastic

4.9e-113

95.54

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN
        MSSSMALFSPP HLSTLSSSL HRNSFSSIPFSSLRTRR+PSSSSLFTIRAAAEPEPAKS+TE+QESLPG NGAMAAAEEVEVVTKFEDAKWINGTWDLN
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLN

Query:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA
        QFRKHGSIDWDSVIDSEARRRKWVEKN ESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQ GNF CKTLLFVA
Subjt:  QFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVA

Query:  VVGVVLIRENEDIETLKKLIDETS
        VVGVVLIR+NEDIETLKKLIDETS
Subjt:  VVGVVLIRENEDIETLKKLIDETS

SwissProt top hits

e value

%identity

Alignment

Q6NKS4 Light-harvesting complex-like protein 3 isotype 2, chloroplastic

9.0e-64

57.26

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-------SPSSSSLFTIRAAAEPEPAKSVTEE-------QESLPGTNGAM---AAAEEVEV
        MS SMALFSPP     +SSSL + N    I  S L T+R         SS +  T      P+PA    EE       + S    NGA+   A     E 
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-------SPSSSSLFTIRAAAEPEPAKSVTEE-------QESLPGTNGAM---AAAEEVEV

Query:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG
        V K+++AKW+NGTWDL QF K G  DWDSVI SEA+RRKW+E N E++SN++ VVF TSIIPWWAW+KRYHLPEAE LNGRAAM+GFFMAYFVDSL+GVG
Subjt:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG

Query:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS
        +V QMGNFFCKTLLFVAV GV+ IR+NED++ LK L DET+
Subjt:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS

Q9SYX1 Light-harvesting complex-like protein 3 isotype 1, chloroplastic

9.0e-64

56.9

Show/hide

Query:  MALFSPPFHLSTLSS-SLCHRNSF---SSIPFSSLRTRRSPSSSSLFTIRAAAE---PEPAKSVTEE----------QESLPGTNGAMAAAE--EVEVVT
        MALFSPP   S+L + +   + SF   SS  FS L   R+ S S   +  AA     PEP + + +E          +E+    N A+   E    E V 
Subjt:  MALFSPPFHLSTLSS-SLCHRNSF---SSIPFSSLRTRRSPSSSSLFTIRAAAE---PEPAKSVTEE----------QESLPGTNGAMAAAE--EVEVVT

Query:  KFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVV
        KF+DA+WINGTWDL QF K G  DWDSVI +EA+RRKW+E+N E++SN++PV+F TSIIPWWAWIKRYHLPEAE LNGRAAM+GFFMAYFVDSL+GVG+V
Subjt:  KFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVV

Query:  GQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS
         QMGNFFCKTLLFVAV GV+ IR+NED++ LK L DET+
Subjt:  GQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS

Arabidopsis top hits

e value

%identity

Alignment

AT4G17600.1 Chlorophyll A-B binding family protein

6.4e-65

56.9

Show/hide

Query:  MALFSPPFHLSTLSS-SLCHRNSF---SSIPFSSLRTRRSPSSSSLFTIRAAAE---PEPAKSVTEE----------QESLPGTNGAMAAAE--EVEVVT
        MALFSPP   S+L + +   + SF   SS  FS L   R+ S S   +  AA     PEP + + +E          +E+    N A+   E    E V 
Subjt:  MALFSPPFHLSTLSS-SLCHRNSF---SSIPFSSLRTRRSPSSSSLFTIRAAAE---PEPAKSVTEE----------QESLPGTNGAMAAAE--EVEVVT

Query:  KFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVV
        KF+DA+WINGTWDL QF K G  DWDSVI +EA+RRKW+E+N E++SN++PV+F TSIIPWWAWIKRYHLPEAE LNGRAAM+GFFMAYFVDSL+GVG+V
Subjt:  KFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVV

Query:  GQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS
         QMGNFFCKTLLFVAV GV+ IR+NED++ LK L DET+
Subjt:  GQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS

AT5G47110.1 Chlorophyll A-B binding family protein

6.4e-65

57.26

Show/hide

Query:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-------SPSSSSLFTIRAAAEPEPAKSVTEE-------QESLPGTNGAM---AAAEEVEV
        MS SMALFSPP     +SSSL + N    I  S L T+R         SS +  T      P+PA    EE       + S    NGA+   A     E 
Subjt:  MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRR-------SPSSSSLFTIRAAAEPEPAKSVTEE-------QESLPGTNGAM---AAAEEVEV

Query:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG
        V K+++AKW+NGTWDL QF K G  DWDSVI SEA+RRKW+E N E++SN++ VVF TSIIPWWAW+KRYHLPEAE LNGRAAM+GFFMAYFVDSL+GVG
Subjt:  VTKFEDAKWINGTWDLNQFRKHGSIDWDSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVG

Query:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS
        +V QMGNFFCKTLLFVAV GV+ IR+NED++ LK L DET+
Subjt:  VVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLIDETS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTCTTCCATGGCTTTGTTTTCTCCTCCTTTCCATCTTTCCACTCTCTCTTCTTCATTATGCCACAGAAATTCCTTCTCCTCCATACCTTTTTCTTCTCTCAGAAC
CAGAAGAAGCCCTTCTTCTTCCTCTCTTTTCACCATCAGAGCCGCTGCGGAACCGGAGCCGGCTAAGTCCGTAACGGAAGAGCAGGAGAGCCTCCCCGGAACAAATGGCG
CGATGGCGGCTGCTGAAGAAGTGGAGGTCGTTACCAAATTTGAAGACGCTAAGTGGATTAATGGAACTTGGGATCTGAATCAGTTCCGGAAACACGGAAGTATCGACTGG
GATTCTGTTATTGATTCCGAGGCTAGGAGGAGAAAATGGGTGGAAAAAAATCGAGAATCATCAAGTAATGAGGATCCCGTGGTGTTTGGGACATCCATAATTCCATGGTG
GGCTTGGATTAAGCGCTACCATCTCCCTGAAGCTGAGACACTCAATGGGCGTGCAGCGATGGTGGGGTTCTTCATGGCTTACTTTGTTGATAGCTTGAGTGGGGTAGGGG
TAGTGGGTCAAATGGGCAACTTCTTCTGCAAAACTCTGCTGTTTGTGGCTGTGGTGGGAGTTGTTTTGATCAGAGAGAATGAAGATATTGAGACTTTGAAGAAGTTGATT
GATGAGACAAGCTTCTCGAAATCGAACACTTTTCTTATAGCCCAAGAAAACCCAAAATCACTCATTTTGAAATTACATAATGTTCTATATGTTGAACATTATAAATGTAT
GAAAGCATGCATTATAGATGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTATACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGATTCCAACGTGATG
ATGGTGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACAATAGGAGAACTGAACTTCTTAAGTACTCTCAACGCCTGCGAAAATCTGCA
CAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCGATTTCTGTGACGAACAAGCAACCGATCCAAAGAAACGTGGCGATTAATCCTCTCGTCAATCTTCGTGCAAA
GCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCACAAGGCTTTGACGAGTTTTCAGGCAAAAAACAAGAGACAAAAGCAGAACCAAAGCA
GCGGATCTACCAAGAATGCTAAGATAATAAAAGAATTAGAAGGATAA

mRNA sequence

Show/hide mRNA sequence

AACAACTCCAAGGTTGAGGAGAGGCGCACTGTACTCTGTTCTGCGTCACAATGTCTTCTTCCATGGCTTTGTTTTCTCCTCCTTTCCATCTTTCCACTCTCTCTTCTTCA
TTATGCCACAGAAATTCCTTCTCCTCCATACCTTTTTCTTCTCTCAGAACCAGAAGAAGCCCTTCTTCTTCCTCTCTTTTCACCATCAGAGCCGCTGCGGAACCGGAGCC
GGCTAAGTCCGTAACGGAAGAGCAGGAGAGCCTCCCCGGAACAAATGGCGCGATGGCGGCTGCTGAAGAAGTGGAGGTCGTTACCAAATTTGAAGACGCTAAGTGGATTA
ATGGAACTTGGGATCTGAATCAGTTCCGGAAACACGGAAGTATCGACTGGGATTCTGTTATTGATTCCGAGGCTAGGAGGAGAAAATGGGTGGAAAAAAATCGAGAATCA
TCAAGTAATGAGGATCCCGTGGTGTTTGGGACATCCATAATTCCATGGTGGGCTTGGATTAAGCGCTACCATCTCCCTGAAGCTGAGACACTCAATGGGCGTGCAGCGAT
GGTGGGGTTCTTCATGGCTTACTTTGTTGATAGCTTGAGTGGGGTAGGGGTAGTGGGTCAAATGGGCAACTTCTTCTGCAAAACTCTGCTGTTTGTGGCTGTGGTGGGAG
TTGTTTTGATCAGAGAGAATGAAGATATTGAGACTTTGAAGAAGTTGATTGATGAGACAAGCTTCTCGAAATCGAACACTTTTCTTATAGCCCAAGAAAACCCAAAATCA
CTCATTTTGAAATTACATAATGTTCTATATGTTGAACATTATAAATGTATGAAAGCATGCATTATAGATGCAAAGGTCTCAAGAGAGAACAAAGTGTTGGTGAGTGTGTA
TACAGAGAGGCAGGAACCAAGAGTAGCAGTAAATCGATTCCAACGTGATGATGGTGTGAACAAAACAGTGAGGAATCAGTGGAAGAAAGAAATAGCTAATAAAGGATACA
ATAGGAGAACTGAACTTCTTAAGTACTCTCAACGCCTGCGAAAATCTGCACAATCACCTGCATCTCCATATCTTCCAACTCCGGAGCCGATTTCTGTGACGAACAAGCAA
CCGATCCAAAGAAACGTGGCGATTAATCCTCTCGTCAATCTTCGTGCAAAGCCCAAGGGTGCCAGATTTACCTCTTGCTTCGGCAACCTGATTCAAAGGTCTCACAAGGC
TTTGACGAGTTTTCAGGCAAAAAACAAGAGACAAAAGCAGAACCAAAGCAGCGGATCTACCAAGAATGCTAAGATAATAAAAGAATTAGAAGGATAA

Protein sequence

Show/hide protein sequence

MSSSMALFSPPFHLSTLSSSLCHRNSFSSIPFSSLRTRRSPSSSSLFTIRAAAEPEPAKSVTEEQESLPGTNGAMAAAEEVEVVTKFEDAKWINGTWDLNQFRKHGSIDW
DSVIDSEARRRKWVEKNRESSSNEDPVVFGTSIIPWWAWIKRYHLPEAETLNGRAAMVGFFMAYFVDSLSGVGVVGQMGNFFCKTLLFVAVVGVVLIRENEDIETLKKLI
DETSFSKSNTFLIAQENPKSLILKLHNVLYVEHYKCMKACIIDAKVSRENKVLVSVYTERQEPRVAVNRFQRDDGVNKTVRNQWKKEIANKGYNRRTELLKYSQRLRKSA
QSPASPYLPTPEPISVTNKQPIQRNVAINPLVNLRAKPKGARFTSCFGNLIQRSHKALTSFQAKNKRQKQNQSSGSTKNAKIIKELEG

CmoCh06G008370 (gene) of Cucurbita moschata (Rifu) v1 genome