CuGenDBv2

Gene ID	CmoCh06G008410
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	Cmo_Chr06:4683937..4686890
RNA-Seq Expression	CmoCh06G008410
Synteny	CmoCh06G008410
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-26

100

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

3.1e-25

95.16

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

2.2e-26

100

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

2.8e-26

98.39

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

2.2e-26

100

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLC8 30S ribosomal protein S6

3.7e-24

93.55

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYD MLLMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

A0A6J1CN79 uncharacterized protein LOC111013137

1.5e-25

95.16

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR++QG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

A0A6J1FEF6 uncharacterized protein LOC111443208

1.0e-26

100

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

A0A6J1KXT7 uncharacterized protein LOC111498530

1.4e-26

98.39

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYFQG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

A0A7J7G738 Uncharacterized protein

6.4e-24

87.1

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG
        MPLYDCMLL+KPHV+KEAL+DLVARVGKHV+RRNGV+TD+KSFG VQLGYGIKKLDGRY+QG
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

4.1e-23

48.28

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGIIIYSLNTNGSSDVTTSSCQDNSSDIIIG---ATYADD
        MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR++QG ++  +    + ++       N  D ++      + D 
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGIIIYSLNTNGSSDVTTSSCQDNSSDIIIG---ATYADD

Query:  DDGHSEHEQGVTLPKQ
          G SE E  +T+P +
Subjt:  DDGHSEHEQGVTLPKQ

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

5.3e-23

49.56

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Query:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGIIIYSLNTNGSSDVTTSSCQDNSSDIIIGATYADDDDG
        MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR++Q  ++ + N N   ++   + +D     ++   + D   G
Subjt:  MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGIIIYSLNTNGSSDVTTSSCQDNSSDIIIGATYADDDDG

Query:  HSEHEQGVTLPKQ
         SE E  +T+P +
Subjt:  HSEHEQGVTLPKQ

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGT
CACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGAATCATTATCTATTCTCTTAATACGAATGGGTCGT
CCGACGTTACTACCTCTAGTTGCCAAGATAACTCGTCGGATATTATTATAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAGGAGTTACATTA
CCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGA

mRNA sequence

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CGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTTTCTCGGCAATCGGCTAAAATCTGCAACAGTTCGAAAGAGG
AGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATG
TGTTCAGAAGAAATGGGGTTGTCACTGACATTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGAATCATTATCTAT
TCTCTTAATACGAATGGGTCGTCCGACGTTACTACCTCTAGTTGCCAAGATAACTCGTCGGATATTATTATAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGA
ACATGAACAAGGAGTTACATTACCTAAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGAT
GGAAAGAATGAACTTAACAAATTTCCTCGATTTAAAATGATTGGTGATGACGACGCAGATGAAGAAGATGACGACGACGACGATGATGACGAAGAATACGACGTGGAGCA
AGAAGAGAGGACAACTGAGTGAATTTTGGTTGTGTCTATTATGATAGCCCAAGTATGAACTTAGTGAAGGGACCTCTGGTACCGTTCTTGTGATATTGTAGGCAGACAAA
TAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAATGCCTTTTGCCTGTTTGTGGGATGTTTTTGTTGAGATGTCAGGT
CTTGGGTTCGAGCCTCTAGATGAAAAGTTTATGTAATGAATATCTCATCGTCTTTTAAAACTTTGCTTTTTCGTTGAAGTTTTATATCTTAACCCGTTGAGTTAAAGCTA
ATGTAGTGTAATATTGCTTCTATTAGCATAGAATGGAATGAATCTCGAGCAGTTATGACATTGTTGGAAAAGATCTTTTTGAGATCATCCAAGACAATTTTATTTTAAGT
AATATCAATTCAAATATAGTTCCGTGGTGTGTAATATTGTCCGTTGTGTG

Protein sequence

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MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYFQGIIIYSLNTNGSSDVTTSSCQDNSSDIIIGATYADDDDGHSEHEQGVTL
PKQGRSVVALAFSEAS

CmoCh06G008410 (gene) of Cucurbita moschata (Rifu) v1 genome