CuGenDBv2

Gene ID	CmoCh06G008430
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	Cmo_Chr06:4690188..4693321
RNA-Seq Expression	CmoCh06G008430
Synteny	CmoCh06G008430
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596894.1 hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-87

96.35

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEK
        LGIADLHTPEAVAAAESAIIGNQPVI LNCSSSSS ESESEESSDDSITSDNND+DNEKSDNQN+DRGNRLSVKLKR KSR+TNCRSESKEK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEK

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]

3.7e-98

100

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

5.7e-91

94.66

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNC-SSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVI LNC SSSSS ESESEESSDDSITSDNND+DNEKSD QNTDRGNRLSVKLKR KSR+ NCRSES+EKGKSNKRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNC-SSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]

7.5e-91

95.15

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCS-SSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVI LNCS SSSS ESESEE+SDDSITSDNNDDDNEKSDN+NTDRGNRLSVKLKR KSRKTN RSESKEKGKS KRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCS-SSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP

Query:  KILELS
        +ILELS
Subjt:  KILELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

4.4e-75

84.88

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRH SKDLL LERKDL SSS ESSLLVCKKNSTSKEP RNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+DAKD+AEKYDIEAL+G+ES+VIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGNQPVI L CSSSS  ESESEESSDDSITS++N+DDNEKSD+QNTD  NR SVKLKR  SRKT+CRS+SK K KS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

3.4e-73

81.46

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRH SKDLL LERKDL SSS ESSLLVCKKNSTSK+P RNEKPITEPA KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAV AAESAIIGN PVI L CSSS   ESESEESSDDSITSD+++DDNEKSD+Q TD  NRLSVKLKR  SRKT+CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        I  LS
Subjt:  ILELS

A0A1S3BJW4 uncharacterized protein LOC103490838

5.3e-74

81.46

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLL LERKDL +SS ESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGN PVI L CSSS   ESESEESSDDSITSD++++DNEKSD+QNTD  NRLSVKLKR  SRK +CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        I  LS
Subjt:  ILELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

5.3e-74

81.46

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLL LERKDL +SS ESSLLVCKKNSTSKEPCRNEKPITEPA KS VLGRV+DFLGV+SEANKKLQ+D+K++A+KYDIEAL+G+ESEVI+LDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGN PVI L CSSS   ESESEESSDDSITSD++++DNEKSD+QNTD  NRLSVKLKR  SRK +CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        I  LS
Subjt:  ILELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

1.8e-98

100

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
        LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPK

Query:  ILELS
        ILELS
Subjt:  ILELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

2.8e-91

94.66

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Query:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM
        MRHASKDLLCLERKDLPSSS ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNG+ESEVIELDLM
Subjt:  MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLM

Query:  LGIADLHTPEAVAAAESAIIGNQPVIALNC-SSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP
        LGIADLHTPEAVAAAESAIIGNQPVI LNC SSSSS ESESEESSDDSITSDNND+DNEKSD QNTDRGNRLSVKLKR KSR+ NCRSES+EKGKSNKRP
Subjt:  LGIADLHTPEAVAAAESAIIGNQPVIALNC-SSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRP

Query:  KILELS
        KILELS
Subjt:  KILELS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

1.1e-23

50.67

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Query:  KDLLCLERKDLPSSS-FESSLLVC---KKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLML
        KDLL LE K+  SSS  +S+LL+C    K     E     KP   P PKSQ+LG++K FLGV++EANKK    ++ + E Y+IEAL G+ESE+IE+DLML
Subjt:  KDLLCLERKDLPSSS-FESSLLVC---KKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLML

Query:  GIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSD
        G+ADL+TPEAV+AAE+AI G  P  A +  SSS  ES+SE   ++S +++
Subjt:  GIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSGESESEESSDDSITSD

Sequences

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CDS sequence

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mRNA sequence

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ATGTTCACTAGGTTGCCCATTGGAGTTCTAAACATGCATATTCTAACCACTCAAGTTTACTCTCCCAAACCAATTTCTCGGCTCTACTTAAGCCTATCGCCGGTCGGCAT
AGCAGTTTATCGGCGACGCCTCCTCAGTTTTCCTCACAGTCGCCGGGAAGAGCTGCCAGCCGCCGCGAGTGGTCGCTGTCCGCCCTTTGCTGTTTGCTCTGTAGCTATCT
CTTTCTTGCACAAAACGCAGAAGACGCGAAAGATGCGGCATGCTAGCAAGGATCTTTTGTGTTTGGAGCGGAAAGATTTGCCCTCTTCGTCTTTTGAATCCTCACTGCTA
GTTTGTAAAAAGAACTCAACGTCCAAGGAACCCTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAAGTATTGGGAAGAGTCAAAGACTTCTTAGGAGT
ATTATCAGAAGCTAATAAAAAGCTGCAATTGGATGCAAAGGACGATGCTGAAAAATATGATATTGAAGCCCTTAATGGCGATGAATCAGAAGTCATTGAATTGGATCTGA
TGTTGGGCATTGCTGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATTGGTAATCAGCCTGTGATTGCATTGAATTGTAGTAGTAGTAGTAGTGGT
GAATCAGAGTCTGAAGAGAGTAGTGATGATAGCATTACAAGTGACAACAATGACGATGATAATGAAAAGAGTGACAACCAGAATACTGACCGTGGGAATCGATTGTCAGT
TAAACTCAAAAGATTGAAGTCTAGAAAAACCAATTGTAGAAGTGAAAGCAAAGAAAAAGGTAAATCAAATAAGCGACCAAAGATTCTAGAGCTTTCTTGAGAGCCATCTT
TTGATTGCATCTAATTCGATAATATGGATGTGTCACTATGTTTGAAAGTATATGAAGTTTCTGATGCTTGCACTGACATAATCTTCAAGGTTGATTGCCTGCCTAGTCCT
TTAAGCTTTTGGGTAGGAAGCGATTTTGCTCAAGCTATTTCTTTCTTCATTTAGTTCATGTGCTTTCTTGGAAGGGAAGGCGTTGTCTTTATGCATTTCTCTTATAGGAA
CTGGAATATAGTTAAGTTGGGAATTATTCTTGATCAGATTACCAATGTTGGTTTGTATACATGATGTCGAACTTCAATACTTCAGAAATAGCCAAATTAAGATATTTTTT
GTTCTATTTGGCCCCTCTTCTTTCTTTCACCAGTTCTTTTATGTTGTCATGCTTTCTAAGGAGAAATTCACTGG

Protein sequence

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MFTRLPIGVLNMHILTTQVYSPKPISRLYLSLSPVGIAVYRRRLLSFPHSRREELPAAASGRCPPFAVCSVAISFLHKTQKTRKMRHASKDLLCLERKDLPSSSFESSLL
VCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDFLGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIALNCSSSSSG
ESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKSRKTNCRSESKEKGKSNKRPKILELS

CmoCh06G008430 (gene) of Cucurbita moschata (Rifu) v1 genome