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CmoCh06G008950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G008950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionethylene-responsive transcription factor 3-like
Genome locationCmo_Chr06:5287711..5288214
RNA-Seq ExpressionCmoCh06G008950
SyntenyCmoCh06G008950
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596944.1 Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia]7.8e-4063.74Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPDSL
        MRRG A    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCP    L
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPDSL

Query:  L--------TLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR
                 TL+  + + S P    +       RR P  PP+   D H+   SS        IA ++ IRR
Subjt:  L--------TLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR

XP_022948893.1 LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like [Cucurbita moschata]1.5e-4668.24Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD--
        MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD  
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD--

Query:  -----SLLTLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR
             +  TL+  + + S P    +       RR P  PP+   D H+   SS        IA ++ IRR
Subjt:  -----SLLTLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR

XP_023005563.1 ethylene-responsive transcription factor 3-like isoform X1 [Cucurbita maxima]4.6e-4061.4Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------
        MR GRA    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC      
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------

Query:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR
             P P +L +  +    P  P  + +        R P     D H+   SS        IA ++ IRR
Subjt:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR

XP_023005565.1 ethylene-responsive transcription factor 3-like isoform X2 [Cucurbita maxima]4.6e-4061.4Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------
        MR GRA    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC      
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------

Query:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR
             P P +L +  +    P  P  + +        R P     D H+   SS        IA ++ IRR
Subjt:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR

XP_023520762.1 ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo]9.8e-4367.52Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPDSL
        MRRGRAAADTAVRV PITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAI+LRGPKAK NFPLPTPTSFFDYPPPCP    L
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPDSL

Query:  L--------TLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQRI
                 TL+  + + S P    +       RR P  PP+   D H+   SS  +
Subjt:  L--------TLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQRI

TrEMBL top hitse value%identityAlignment
A0A6J1EVY5 ethylene-responsive transcription factor 3-like2.0e-3369.77Show/hide
Query:  MRRGR--AAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP-PCPIP
        MRRGR  A A  A R A   GSERRYRGVR+RPWGRFAAEIRDP KKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPL  P SFFDYPP P P P
Subjt:  MRRGR--AAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP-PCPIP

Query:  DSLLTLTDPLPAPSAPLLSPSVVPDHPLR
                P+ AP  P L P    ++P R
Subjt:  DSLLTLTDPLPAPSAPLLSPSVVPDHPLR

A0A6J1GAK1 LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like7.1e-4768.24Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD--
        MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD  
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD--

Query:  -----SLLTLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR
             +  TL+  + + S P    +       RR P  PP+   D H+   SS        IA ++ IRR
Subjt:  -----SLLTLTDPLPAPSAPLLSPSVVPDHPLRRLP-LPPLA--DTHARRPSSQR------IAIATAIRR

A0A6J1HJM8 ethylene-responsive transcription factor 3-like2.0e-3369.77Show/hide
Query:  MRRGR--AAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP-PCPIP
        MRRGR  A A  A R A   GSERRYRGVR+RPWGRFAAEIRDP KKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPL  P SFFDYPP P P P
Subjt:  MRRGR--AAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP-PCPIP

Query:  DSLLTLTDPLPAPSAPLLSPSVVPDHPLR
                P+ AP  P L P    ++P R
Subjt:  DSLLTLTDPLPAPSAPLLSPSVVPDHPLR

A0A6J1KXR5 ethylene-responsive transcription factor 3-like isoform X22.2e-4061.4Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------
        MR GRA    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC      
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------

Query:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR
             P P +L +  +    P  P  + +        R P     D H+   SS        IA ++ IRR
Subjt:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR

A0A6J1L2I9 ethylene-responsive transcription factor 3-like isoform X12.2e-4061.4Show/hide
Query:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------
        MR GRA    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC      
Subjt:  MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPC------

Query:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR
             P P +L +  +    P  P  + +        R P     D H+   SS        IA ++ IRR
Subjt:  -----PIPDSLLTLTDPLPAPSAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQR------IAIATAIRR

SwissProt top hitse value%identityAlignment
O80339 Ethylene-responsive transcription factor 35.6e-2567.01Show/hide
Query:  MRRGRAAADTA--VRVAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPP
        MRRGR ++  A    VA I GS  E R+RGVR+RPWGRFAAEIRDP KK RVWLGTFDSAE+AARAYD+AA  LRGPKAKTNFP+ + +     PPP
Subjt:  MRRGRAAADTA--VRVAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPP

Q40477 Ethylene-responsive transcription factor 44.4e-2277.78Show/hide
Query:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPT
        E  YRGVR+RPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AA   RGPKAKTNFP PT
Subjt:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPT

Q9FE67 Ethylene-responsive transcription factor 91.3e-2179.03Show/hide
Query:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP
        E  +RGVR+RPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFPLP
Subjt:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP

Q9LW49 Ethylene-responsive transcription factor 42.6e-2277.78Show/hide
Query:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPT
        E  YRGVR+RPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AA   RGPKAKTNFPLP+
Subjt:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPT

Q9SXS8 Ethylene-responsive transcription factor 32.1e-2774.44Show/hide
Query:  MRRGRAAADTAVRVAPITG--------SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP
        MRRGRAAA      AP+TG         E R+RGVR+RPWGRFAAEIRDP KKTRVWLGTFDSAEDAARAYD AA  LRGPKAKTNFPLP
Subjt:  MRRGRAAADTAVRVAPITG--------SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP

Arabidopsis top hitse value%identityAlignment
AT1G03800.1 ERF domain protein 104.6e-2277.05Show/hide
Query:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPL
        E RYRGVRRRPWGR+AAEIRDP+KK RVWLG+F++ E+AARAYD+AAI  RG KA TNFPL
Subjt:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPL

AT1G28370.1 ERF domain protein 112.7e-2275.81Show/hide
Query:  GSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP
        G+  RYRGVR+RPWGR+AAEIRDP KK+RVWLGTFD+ E+AARAYD  AI  RG KAKTNFP
Subjt:  GSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP

AT1G50640.1 ethylene responsive element binding factor 34.0e-2667.01Show/hide
Query:  MRRGRAAADTA--VRVAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPP
        MRRGR ++  A    VA I GS  E R+RGVR+RPWGRFAAEIRDP KK RVWLGTFDSAE+AARAYD+AA  LRGPKAKTNFP+ + +     PPP
Subjt:  MRRGRAAADTA--VRVAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPP

AT3G20310.1 ethylene response factor 71.6e-2244.77Show/hide
Query:  MRRGRAAADTAVRVAPITG---SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIP
        MR+GR ++     +    G    E RYRGVR+RPWGRFAAEIRDPLKK+RVWLGTFDSA DAARAYD AA  LRGPKAKTNFP+       D  P  P+ 
Subjt:  MRRGRAAADTAVRVAPITG---SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIP

Query:  DSLLTLTDPLPAPSAPLLSPSVVP--DHPLRRLPLPPLADTHARRPSSQRIAIATAIRRPRSSTTATSLPRP
           LT        S P++   + P  DH L           + +    Q+I    A     S+  + S PRP
Subjt:  DSLLTLTDPLPAPSAPLLSPSVVP--DHPLRRLPLPPLADTHARRPSSQRIAIATAIRRPRSSTTATSLPRP

AT5G44210.1 erf domain protein 99.2e-2379.03Show/hide
Query:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP
        E  +RGVR+RPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFPLP
Subjt:  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGAGGGAGAGCGGCGGCGGACACGGCGGTGCGTGTGGCACCAATAACCGGGTCGGAGCGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGC
GGAGATCAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGCGGCCCCA
AAGCTAAAACCAATTTCCCCCTTCCCACTCCCACCTCCTTTTTCGATTACCCTCCTCCTTGCCCGATCCCCGATTCCTTACTAACCCTCACAGACCCACTTCCAGCACCC
TCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGACCACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGCCGATACCCACGCACGCCGCCCGTCGTCCCAGAGGATTGC
CATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGAGGGAGAGCGGCGGCGGACACGGCGGTGCGTGTGGCACCAATAACCGGGTCGGAGCGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGC
GGAGATCAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGCGGCCCCA
AAGCTAAAACCAATTTCCCCCTTCCCACTCCCACCTCCTTTTTCGATTACCCTCCTCCTTGCCCGATCCCCGATTCCTTACTAACCCTCACAGACCCACTTCCAGCACCC
TCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGACCACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGCCGATACCCACGCACGCCGCCCGTCGTCCCAGAGGATTGC
CATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGA
Protein sequenceShow/hide protein sequence
MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPDSLLTLTDPLPAP
SAPLLSPSVVPDHPLRRLPLPPLADTHARRPSSQRIAIATAIRRPRSSTTATSLPRP