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CmoCh06G009000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G009000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPescadillo homolog
Genome locationCmo_Chr06:5405364..5406549
RNA-Seq ExpressionCmoCh06G009000
SyntenyCmoCh06G009000
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000466 - maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:2000232 - regulation of rRNA processing (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
GO:0070545 - PeBoW complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR010613 - Pescadillo


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581051.1 Nuclear pore complex protein 210, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4179.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKGIFPREPKKKVKGNHHTYYH+KDVAFL HEPL+EKFREIRAYE++  K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

XP_022152145.1 pescadillo homolog [Momordica charantia]2.4e-4281.65Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPGKKKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFRE+RAYE++  K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

XP_022964828.1 pescadillo homolog [Cucurbita moschata]7.1e-4279.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKG+FPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFR+IRAYE++ +K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

XP_022970305.1 pescadillo homolog [Cucurbita maxima]7.1e-4279.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKG+FPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFR+IRAYE++ +K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

XP_023519777.1 pescadillo homolog [Cucurbita pepo subsp. pepo]7.1e-4279.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKG+FPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFR+IRAYE++ +K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

TrEMBL top hitse value%identityAlignment
A0A6J1DD37 Pescadillo homolog1.2e-4281.65Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPGKKKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFRE+RAYE++  K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

A0A6J1FA59 Pescadillo homolog1.0e-4179.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKGIFPREPKKKVKGNHHTYYH+KDVAFL HEPL+EKFREIRAYE++  K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

A0A6J1HM21 Pescadillo homolog3.4e-4279.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKG+FPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFR+IRAYE++ +K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

A0A6J1I2H7 Pescadillo homolog3.4e-4279.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKG+FPREPKKKVKGNHHTYYHLKDVAFL HEPLLEKFR+IRAYE++ +K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

A0A6J1J6F1 Pescadillo homolog1.0e-4179.82Show/hide
Query:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ
        M NKVTRKKHYRPPG+KKEGNA+RYVTR+QAVKQLQVSLP FRKLCIFKGIFPREPKKKVKGNHHTYYH+KDVAFL HEPL+EKFREIRAYE++  K   
Subjt:  MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQ

Query:  KRIRSVQTF
        K+ +    F
Subjt:  KRIRSVQTF

SwissProt top hitse value%identityAlignment
A7TSA8 Pescadillo homolog8.7e-1950.56Show/hide
Query:  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLM
        K   GNA  +VTR+QAV++LQVSL  FR+LCIFKGI+PREP+ K K N       T+Y+ KD+ +L HEP+L KFRE + + ++ T+ +
Subjt:  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLM

A8JBB2 Pescadillo homolog1.3e-2257.47Show/hide
Query:  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR
        K K GNA++Y+TRTQAV++LQ+ L  FR+LCI KG+ PREPKKK KG + TYYHLKD+ +L HEPLL  FR I+A++++  K   K+
Subjt:  KKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR

Q6FSU1 Pescadillo homolog5.1e-1951.76Show/hide
Query:  GNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLM
        GNA  ++TR+QAV++LQ+SL  FR+LCIFKGI+PREPK K K N       T+Y+ KD+ +L HEP+L KFRE + + R+ T+ +
Subjt:  GNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNH-----HTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLM

Q851S7 Pescadillo homolog3.7e-3367.02Show/hide
Query:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR
        KHYRP GKKKEGNA++Y+TRT+AVK LQ+SL  FRKLCI KG+FPR+PKKKV+GNH TYYH+KD+AFL H+PL+EKFREI+ + ++  K   K+
Subjt:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR

Q9LYK7 Pescadillo homolog5.1e-3572.34Show/hide
Query:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR
        KHYRP GKKKEGNA+RY+TR+QA+K LQV+L  FR+LCI KGIFPREPKKK+KGNHHTYYH+KD+AFL HEPLLEKFREI+ Y+++  K   K+
Subjt:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR

Arabidopsis top hitse value%identityAlignment
AT5G14520.1 pescadillo-related3.6e-3672.34Show/hide
Query:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR
        KHYRP GKKKEGNA+RY+TR+QA+K LQV+L  FR+LCI KGIFPREPKKK+KGNHHTYYH+KD+AFL HEPLLEKFREI+ Y+++  K   K+
Subjt:  KHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAACAAAGTTACGAGGAAGAAGCATTACAGACCTCCGGGGAAGAAGAAGGAGGGTAACGCATCGAGGTACGTGACCAGGACCCAGGCTGTGAAGCAGCTGCAAGT
TAGTTTGCCACCTTTCAGGAAGCTATGCATTTTCAAGGGAATATTTCCTCGAGAGCCAAAGAAGAAGGTTAAAGGAAATCACCACACTTACTACCATTTGAAAGATGTTG
CTTTTCTTCGTCATGAACCACTCTTGGAGAAGTTTAGAGAGATTAGGGCATATGAAAGAAGATCAACAAAGCTGATGCAAAAAAGAATAAGGAGCGTGCAAACTTTCTAA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTCCCTTTTTTTCCCTTTTTTTTTTCCCTTCTTTTTCCTTCCCTTTTTTCTTTCTGCTGCAATGGCGAACAAAGTTACGAGGAAGAAGCATTACAGACCTCCGGG
GAAGAAGAAGGAGGGTAACGCATCGAGGTACGTGACCAGGACCCAGGCTGTGAAGCAGCTGCAAGTTAGTTTGCCACCTTTCAGGAAGCTATGCATTTTCAAGGGAATAT
TTCCTCGAGAGCCAAAGAAGAAGGTTAAAGGAAATCACCACACTTACTACCATTTGAAAGATGTTGCTTTTCTTCGTCATGAACCACTCTTGGAGAAGTTTAGAGAGATT
AGGGCATATGAAAGAAGATCAACAAAGCTGATGCAAAAAAGAATAAGGAGCGTGCAAACTTTCTAA
Protein sequenceShow/hide protein sequence
MANKVTRKKHYRPPGKKKEGNASRYVTRTQAVKQLQVSLPPFRKLCIFKGIFPREPKKKVKGNHHTYYHLKDVAFLRHEPLLEKFREIRAYERRSTKLMQKRIRSVQTF