; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G009300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G009300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr06:6788585..6790271
RNA-Seq ExpressionCmoCh06G009300
SyntenyCmoCh06G009300
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041373 - Reverse transcriptase, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PIN22487.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]7.9e-21968.32Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        ++PSIE+ P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGWT+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V+KEI+KWLDAGIIYPI++SSWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPLPFIDQMLDRLAGK  YCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG
        QI I PEDQEKTTFTCPYG FAFRRMPFGLCNAPATFQRCMMAIFTDM                  F +            ++ NL+LNWEKCHFMV EG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+LLE +  F FD  C+ AF  LK  L +API++  DW+ PF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDAS  AVGA+LGQ+K K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ K +AKPRLIRW+LLLQEF++
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS
        EI D KG  N +ADHLSR+E+  +   S  I+D FPDEQLL I +S
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS

XP_023520803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784278 [Cucurbita pepo subsp. pepo]6.6e-25885.66Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        +RPSIEEAPQL+ KPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVK IEQQRRLNPMMKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        VRK+ILKWLDA IIYPIANSSWV+ IQCVPKKGGI VM  ENNELI TRIVN WRICMDYRRLNKAT KDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGR-----FHKDEKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIE
        QITI+PEDQEKTTFTCPYGIF FRRMPF LCNAPATFQRCMMAIFTDM       F  D      ++E C  + N G     K+ +R    DRAKIEAIE
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGR-----FHKDEKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIE

Query:  RLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVL
        RLNPPTSVKGI+SFLGH GFYRRFIKDFSKIAKPLCSLLESNRKF FDKQCMT FQALKTALTTAPIMST DWN  FELMC ASGHAVG MLGQKKGKVL
Subjt:  RLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVL

Query:  HPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENME
        HPIYYA+KTLNEAQVNYTTTEKEL AVVFAVEKFRAYLFGAKVK+YTDH AIKHLMMKPNAKPRLIRWILL+QEFEIEIVDTKGANNHVADHLSRMENME
Subjt:  HPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENME

Query:  EKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW
         KVNSKEIDDAF D QLL I       SSSRMTATPW
Subjt:  EKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW

XP_023521407.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo]4.1e-29290.89Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        VRKEILKWLDAGIIYPIANSS V+PIQCVPKKGGITVMA ENNELIPTRIVNGWRICMDYRRLNKAT KDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG
        QITI+PEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM                          G+  +  +EKNLVLNWEKCHFMVNEG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGI+SFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMST DWNSPF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLN AQVNYTTTEKELLAVVFAVEKFRAYLFGAKVK+YTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW
        EIVDTKGANN+V DHLSRMENMEEKVNSKEIDDAFPDEQLL IN      SSSRMTATPW
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW

XP_023521781.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785639, partial [Cucurbita pepo subsp. pepo]1.2e-27086.4Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
                                       KGGITVMA ENNELI TRIVNGWRICMDYRRLNKAT KDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG
        QITI+PEDQEKTTFTCPY IFAFRRMPFGLCNAPATFQRCMMAIFTDM                          G+  +  +EKNLVLNWEKCHFMVNEG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGI+SFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMST DWNSPF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLN AQVNYTTTEKELLAVVFAVEKFRAYLFGAKVK+YTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATP
        EIVDTKGANNHVADHLS MENMEEKVNSKEIDDAFPDEQLL INS+SSSYSSSRMTATP
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATP

XP_023522102.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo]1.7e-29090.54Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        VRKEILKWLDAGIIYPIANSS V+PIQCVPKKGGITVMA ENNELI TRIVNGWRICMDYRRLNKAT KDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG
        QITI+PEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM                          G+  +  +EKNLVLNWEKCHFMVNEG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM--------------------------GRFHK--DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGI+SFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTT PIMST DWNSPF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELL VVFAVEKFRAYLFGAKVK+YTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW
        EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAF DEQLL IN      SSSRM ATPW
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPW

TrEMBL top hitse value%identityAlignment
A0A2G9FWY3 Reverse transcriptase1.0e-21667.95Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        ++PSIEE P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGWT+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V+KEI+KWLDAGIIYPI++SSWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPL FIDQMLDRLAGK  YCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG
        QI I PEDQEK TFTCPYG FAFRRMPFGLCNAPATFQRCMMAIFTDM                  F +            ++ NL+LNWEKCHFMV EG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+LLE +  F FD  C  AF  LK  L +API++  DW+ PF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDAS  AVGA+LGQ+K K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ K +AKPRLIRW+LLLQEF++
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS
        EI D KG  N +ADHLSR+E+  +      I+D FPDEQLL I +S
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS

A0A2G9HWF8 Reverse transcriptase2.2e-21466.85Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        ++PSIEE P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGWT+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V+KEI+KWLDAGIIYPI++ SW++P+QCVPKKGGITV+   +NE IPT+ V GWR+CMDYR+LNKAT KDHFPLPFIDQMLDRLAGK  YCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG
        QI I PEDQEKTTFTCPYG FAFRR+PF LCNAPATFQRCMMAIFTDM                  F +            ++ NLVLNWEKCHFMV EG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHK+S RGIEVD+AK+E IE+L P TSVKG++SFLGHAGFYRRFIKDF KI+KPLC LLE +  F FD  C+ AF  LK  L +API++  DW+ PF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDAS  A+GA+LGQ+K K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ K +AKPRLIRW+LLLQEF++
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS
        EI D KG  N +ADHLSR+E+  +      I+D FPDEQLL I +S
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS

A0A2G9HYA0 Reverse transcriptase3.8e-21968.32Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        ++PSIE+ P L+LKPLP +L YAYLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGWT+ADIKGISPS CMHKI LE+ +  S+E QRRLNP+MKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V+KEI+KWLDAGIIYPI++SSWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPLPFIDQMLDRLAGK  YCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG
        QI I PEDQEKTTFTCPYG FAFRRMPFGLCNAPATFQRCMMAIFTDM                  F +            ++ NL+LNWEKCHFMV EG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+LLE +  F FD  C+ AF  LK  L +API++  DW+ PF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDAS  AVGA+LGQ+K K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ K +AKPRLIRW+LLLQEF++
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS
        EI D KG  N +ADHLSR+E+  +   S  I+D FPDEQLL I +S
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS

A0A2G9HYD8 Reverse transcriptase5.5e-21867.95Show/hide
Query:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV
        ++PSIE+ P L+LKPLP +L Y YLG+  TLP+IIS++LS  Q + LL  L+ HKGAIGWT+ADIKGISPS CMHKI LE+ +  S+E QRRLN +MKEV
Subjt:  MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEV

Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V+KEI+KWLDAGIIYPI++SSWV+P+QCVPKKGGITV+   +NELIPTR V GWR+CMDYR+LNKAT KDHFPLPFIDQMLDRLAGK  YCFLDGYSGYN
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG
        QI I PEDQEKTTFTCPYG FAFRRMPFGLCNAPATFQRCMMAIFTDM                  F +            ++ NLVLNWEKCHFMV EG
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDM----------------GRFHK------------DEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF
        IVLGHK+S RGIEVD+AK+E IE+L PPTSVKG++SFLGHAGFYRRFIKDFSKI+KPLC+LLE +  F FD  C+ AF  LK  L +API++  DW+ PF
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPF

Query:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI
        ELMCDAS  A+GA+LGQ+K K+   IYYASKTLN+AQ+NYTTTEKELLAVVFA +KFR+YL G KV +YTDHAAI++L+ K +AKPRLIRW+LLLQEF++
Subjt:  ELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEI

Query:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS
        EI D KG  N +ADHLSR+E+  +   S  I+D FPDEQLL I +S
Subjt:  EIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSS

A0A6P6GDJ4 Reverse transcriptase5.9e-21266.05Show/hide
Query:  PSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVR
        PS+E  P +DLKPLP +LKY +LG   TLP+IIS+ LS  QE  LLE L++HK A+GWT+ADIKGISPS+CMHKI +EE    ++E QRRLNP +K+VV 
Subjt:  PSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVR

Query:  KEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQI
         EILK LDAGIIYPI++S+WV+PIQ VPKKGG+TV   + +ELIPTR+V GWR+C+DYR+LNKAT KDHFPLPFIDQML+RLAGK +YCFLDGYSGYNQI
Subjt:  KEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQI

Query:  TINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGR-----FHKD-----------------------EKNLVLNWEKCHFMVNEGIV
         I P+DQEKTTFTCPYG FA+RRMPFGLCNAPATFQRCMM+IF+DM       F  D                       E NLVLNWEKCHFMV EGIV
Subjt:  TINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGR-----FHKD-----------------------EKNLVLNWEKCHFMVNEGIV

Query:  LGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFEL
        LGHK+S+RGIEVD+AKIE IE+L PPTS+KGI+SFLGHAGFYRRFIKDFSKI KPLC+LL  +  FVFD +CM AF  LK  L  APIM T +WN PFE+
Subjt:  LGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFEL

Query:  MCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEI
        MCDAS +A+GA+LGQ+K K LH IYYAS+TLN+AQ+NY TTEKE+LA+VFA +KFRAYL G+K  +YTDH+AIK+LM K  +KPRLIRW+LLLQEF++EI
Subjt:  MCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEI

Query:  VDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEIN
        +D KG  N VADHLSR+E  EEK   ++I++ FPDE++ +++
Subjt:  VDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEIN

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.5e-6836.87Show/hide
Query:  KEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYS
        ++ V  +I   L+ GII   +NS + +PI  VPKK   +   K             +RI +DYR+LN+ T  D  P+P +D++L +L   +++  +D   
Subjt:  KEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYS

Query:  GYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH--------------KDE--------------KNLVLNWEKCHFMV
        G++QI ++PE   KT F+  +G + + RMPFGL NAPATFQRCM  I   +   H               DE               NL L  +KC F+ 
Subjt:  GYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH--------------KDE--------------KNLVLNWEKCHFMV

Query:  NEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKF-VFDKQCMTAFQALKTALTTAPIMSTLDW
         E   LGH ++  GI+ +  KIEAI++   PT  K IK+FLG  G+YR+FI +F+ IAKP+   L+ N K    + +  +AF+ LK  ++  PI+   D+
Subjt:  NEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKF-VFDKQCMTAFQALKTALTTAPIMSTLDW

Query:  NSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQ
           F L  DAS  A+GA+L Q      HP+ Y S+TLNE ++NY+T EKELLA+V+A + FR YL G   ++ +DH  +  L    +   +L RW + L 
Subjt:  NSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQ

Query:  EFEIEIVDTKGANNHVADHLSRMENMEEKVNSKE
        EF+ +I   KG  N VAD LSR++ +EE   S++
Subjt:  EFEIEIVDTKGANNHVADHLSRMENMEEKVNSKE

P10394 Retrovirus-related Pol polyprotein from transposon 4121.4e-5631.85Show/hide
Query:  EVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSG
        E ++ ++ K +   I+ P + S + +P+  VPKK              P      WR+ +DYR++NK    D FPLP ID +LD+L    ++  LD  SG
Subjt:  EVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSG

Query:  YNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTD---------------MGRFHKD-------------EKNLVLNWEKCHFMVN
        ++QI ++   ++ T+F+   G + F R+PFGL  AP +FQR M   F+                +G   K              E NL L+ EKC F ++
Subjt:  YNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTD---------------MGRFHKD-------------EKNLVLNWEKCHFMVN

Query:  EGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNS
        E   LGHK + +GI  D  K + I+    P      + F+    +YRRFIK+F+  ++ +  L + N  F +  +C  AF  LK+ L    ++   D++ 
Subjt:  EGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNS

Query:  PFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEF
         F +  DAS  A GA+L Q       P+ YAS+   + + N +TTE+EL A+ +A+  FR Y++G    + TDH  + +L    N   +L R  L L+E+
Subjt:  PFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEF

Query:  EIEIVDTKGANNHVADHLSRMENMEEK
           +   KG +NHVAD LSR+   E K
Subjt:  EIEIVDTKGANNHVADHLSRMENMEEK

P20825 Retrovirus-related Pol polyprotein from transposon 2971.7e-6234.72Show/hide
Query:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN
        V  ++ + L+ G+I   +NS + +P   VPKK   +               N +R+ +DYR+LN+ T  D +P+P +D++L +L    ++  +D   G++
Subjt:  VRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYN

Query:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH----------------------------KDEKNLVLNWEKCHFMVNEG
        QI ++ E   KT F+   G + + RMPFGL NAPATFQRCM  I   +   H                              + NL L  +KC F+  E 
Subjt:  QITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRFH----------------------------KDEKNLVLNWEKCHFMVNEG

Query:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDK-QCMTAFQALKTALTTAPIMSTLDWNSP
          LGH ++  GI+ +  K++AI     PT  K I++FLG  G+YR+FI +++ IAKP+ S L+   K    K + + AF+ LK  +   PI+   D+   
Subjt:  IVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDK-QCMTAFQALKTALTTAPIMSTLDWNSP

Query:  FELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIK--HLMMKPNAKPRLIRWILLLQE
        F L  DAS  A+GA+L Q      HPI + S+TLN+ ++NY+  EKELLA+V+A + FR YL G +  + +DH  ++  H + +P AK  L RW + L E
Subjt:  FELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKLYTDHAAIK--HLMMKPNAKPRLIRWILLLQE

Query:  FEIEIVDTKGANNHVADHLSRMENMEEKVNSK
        ++ +I   KG  N VAD LSR++ +EE  +S+
Subjt:  FEIEIVDTKGANNHVADHLSRMENMEEKVNSK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.4e-5532.98Show/hide
Query:  ADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRR
        ADI  I      H I+++ G      Q   +    ++ + K + K LD   I P + S   +P+  VPKK G                   +R+C+DYR 
Subjt:  ADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRR

Query:  LNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRF-----------
        LNKAT  D FPLP ID +L R+     +  LD +SGY+QI + P+D+ KT F  P G + +  MPFGL NAP+TF R M   F D+ RF           
Subjt:  LNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAIFTDMGRF-----------

Query:  ---------HKD-------EKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLE
                 H D        +NL++  +KC F   E   LG+ I  + I   + K  AI     P +VK  + FLG   +YRRFI + SKIA+P+     
Subjt:  ---------HKD-------EKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLE

Query:  SNRKFVFDKQCMT-----AFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQ--KKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEK
          + F+ DK   T     A + LK AL  +P++   +  + + L  DAS   +GA+L +   K K++  + Y SK+L  AQ NY   E ELL ++ A+  
Subjt:  SNRKFVFDKQCMT-----AFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQ--KKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEK

Query:  FRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEID
        FR  L G    L TDH ++  L  K     R+ RW+  L  ++  +    G  N VAD +SR         S+ ID
Subjt:  FRAYLFGAKVKLYTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEID

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.8e-6434.46Show/hide
Query:  MKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGY
        M+  V ++I + L  GII P +NS + +PI  VPKK       K N E         +R+ +D++RLN  T  D +P+P I+  L  L    ++  LD  
Subjt:  MKEVVRKEILKWLDAGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGY

Query:  SGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAI------------FTDMGRFHKD----------------EKNLVLNWEKCHFM
        SG++QI +   D  KT F+   G + F R+PFGL NAPA FQR +  I              D+  F +D                + NL +N EK HF+
Subjt:  SGYNQITINPEDQEKTTFTCPYGIFAFRRMPFGLCNAPATFQRCMMAI------------FTDMGRFHKD----------------EKNLVLNWEKCHFM

Query:  VNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSL---LESNRK--------FVFDKQCMTAFQALKTAL
          +   LG+ ++  GI+ D  K+ AI  + PPTSVK +K FLG   +YR+FI+D++K+AKPL +L   L +N K           D+  + +F  LK+ L
Subjt:  VNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSL---LESNRK--------FVFDKQCMTAFQALKTAL

Query:  TTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGA-KVKLYTDHAAIKHLMMKPNA
         ++ I++   +  PF L  DAS  A+GA+L Q       PI Y S++LN+ + NY T EKE+LA++++++  RAYL+GA  +K+YTDH  +   +   N 
Subjt:  TTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGA-KVKLYTDHAAIKHLMMKPNA

Query:  KPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEID-DAFPDEQLLEINSSSSS-YSSSRM
          +L RW   ++E+  E++   G +N VAD LSR   +  ++N    D DA P++ +  + ++ S+ + SSR+
Subjt:  KPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEID-DAFPDEQLLEINSSSSS-YSSSRM

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein7.0e-1636.36Show/hide
Query:  DEKNLVLNWEKCHFMVNEGIVLGHK--ISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQ
        ++     N +KC F   +   LGH+  IS  G+  D AK+EA+     P +   ++ FLG  G+YRRF+K++ KI +PL  LL+ N    + +    AF+
Subjt:  DEKNLVLNWEKCHFMVNEGIVLGHK--ISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPLCSLLESNRKFVFDKQCMTAFQ

Query:  ALKTALTTAPIMSTLDWNSPF
        ALK A+TT P+++  D   PF
Subjt:  ALKTALTTAPIMSTLDWNSPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACCTTCTATTGAGGAAGCGCCACAGCTGGACTTAAAACCACTACCACCTAACCTTAAGTATGCTTATTTAGGTGATAAGAAGACACTACCCATCATCATCTCAGC
GACACTATCCTCGACTCAAGAGGATATGCTCCTAGAAACATTGAAGAAGCACAAGGGGGCGATAGGTTGGACATTGGCAGATATAAAAGGAATTAGCCCTTCACTATGCA
TGCACAAAATACAATTGGAGGAAGGAAAAGTTAAGTCCATTGAGCAACAAAGACGATTAAATCCCATGATGAAGGAGGTTGTTAGAAAGGAGATTCTCAAATGGCTAGAT
GCTGGAATAATTTATCCAATTGCAAATAGCAGCTGGGTCAATCCTATTCAATGTGTTCCGAAGAAAGGAGGGATAACAGTAATGGCAAAGGAGAACAATGAGTTGATCCC
CACTAGAATAGTGAATGGATGGAGAATTTGCATGGATTATAGAAGGCTAAACAAAGCGACATGTAAGGATCATTTTCCCTTACCATTCATTGATCAAATGCTTGATAGGC
TTGCTGGAAAGTCACATTATTGCTTCTTGGATGGTTATTCGGGATACAATCAAATTACAATCAATCCAGAAGATCAAGAGAAAACTACATTCACATGCCCATATGGAATT
TTTGCCTTTAGACGAATGCCCTTTGGACTATGTAATGCTCCAGCGACATTTCAACGTTGCATGATGGCCATTTTTACAGATATGGGAAGGTTCCACAAAGATGAGAAGAA
TCTTGTACTGAATTGGGAAAAATGTCATTTTATGGTCAATGAGGGAATAGTGTTAGGCCACAAGATCTCAAGAAGAGGAATAGAAGTTGATAGAGCCAAGATAGAAGCTA
TTGAAAGATTGAATCCACCTACGTCAGTTAAAGGTATAAAAAGCTTTTTGGGCCATGCAGGGTTTTATAGGAGGTTTATTAAAGATTTCTCCAAGATTGCAAAACCATTG
TGTAGTTTGTTGGAGTCAAATAGAAAATTCGTTTTTGACAAACAATGCATGACTGCCTTCCAAGCATTAAAGACAGCGCTGACCACAGCTCCTATAATGTCAACACTCGA
TTGGAATTCACCATTTGAGTTGATGTGTGATGCTAGTGGCCATGCTGTGGGGGCAATGTTAGGACAGAAAAAGGGGAAGGTACTTCATCCTATCTATTATGCCAGCAAAA
CGTTGAATGAGGCTCAAGTGAATTATACAACCACTGAAAAAGAATTGTTGGCCGTAGTATTCGCTGTTGAAAAGTTCAGAGCTTATTTATTTGGAGCAAAGGTGAAACTG
TACACTGACCATGCAGCAATCAAGCACCTAATGATGAAACCGAATGCCAAGCCAAGATTAATTAGATGGATTCTACTGTTACAAGAGTTCGAGATAGAAATCGTGGACAC
GAAAGGAGCTAATAACCATGTAGCGGATCATTTATCTAGAATGGAGAACATGGAAGAAAAGGTCAATAGCAAAGAAATTGATGATGCATTTCCGGATGAACAGCTGCTCG
AGATAAACAGCAGTAGCAGCAGCTACAGCAGTAGCAGAATGACAGCAACTCCATGGATGCAGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACCTTCTATTGAGGAAGCGCCACAGCTGGACTTAAAACCACTACCACCTAACCTTAAGTATGCTTATTTAGGTGATAAGAAGACACTACCCATCATCATCTCAGC
GACACTATCCTCGACTCAAGAGGATATGCTCCTAGAAACATTGAAGAAGCACAAGGGGGCGATAGGTTGGACATTGGCAGATATAAAAGGAATTAGCCCTTCACTATGCA
TGCACAAAATACAATTGGAGGAAGGAAAAGTTAAGTCCATTGAGCAACAAAGACGATTAAATCCCATGATGAAGGAGGTTGTTAGAAAGGAGATTCTCAAATGGCTAGAT
GCTGGAATAATTTATCCAATTGCAAATAGCAGCTGGGTCAATCCTATTCAATGTGTTCCGAAGAAAGGAGGGATAACAGTAATGGCAAAGGAGAACAATGAGTTGATCCC
CACTAGAATAGTGAATGGATGGAGAATTTGCATGGATTATAGAAGGCTAAACAAAGCGACATGTAAGGATCATTTTCCCTTACCATTCATTGATCAAATGCTTGATAGGC
TTGCTGGAAAGTCACATTATTGCTTCTTGGATGGTTATTCGGGATACAATCAAATTACAATCAATCCAGAAGATCAAGAGAAAACTACATTCACATGCCCATATGGAATT
TTTGCCTTTAGACGAATGCCCTTTGGACTATGTAATGCTCCAGCGACATTTCAACGTTGCATGATGGCCATTTTTACAGATATGGGAAGGTTCCACAAAGATGAGAAGAA
TCTTGTACTGAATTGGGAAAAATGTCATTTTATGGTCAATGAGGGAATAGTGTTAGGCCACAAGATCTCAAGAAGAGGAATAGAAGTTGATAGAGCCAAGATAGAAGCTA
TTGAAAGATTGAATCCACCTACGTCAGTTAAAGGTATAAAAAGCTTTTTGGGCCATGCAGGGTTTTATAGGAGGTTTATTAAAGATTTCTCCAAGATTGCAAAACCATTG
TGTAGTTTGTTGGAGTCAAATAGAAAATTCGTTTTTGACAAACAATGCATGACTGCCTTCCAAGCATTAAAGACAGCGCTGACCACAGCTCCTATAATGTCAACACTCGA
TTGGAATTCACCATTTGAGTTGATGTGTGATGCTAGTGGCCATGCTGTGGGGGCAATGTTAGGACAGAAAAAGGGGAAGGTACTTCATCCTATCTATTATGCCAGCAAAA
CGTTGAATGAGGCTCAAGTGAATTATACAACCACTGAAAAAGAATTGTTGGCCGTAGTATTCGCTGTTGAAAAGTTCAGAGCTTATTTATTTGGAGCAAAGGTGAAACTG
TACACTGACCATGCAGCAATCAAGCACCTAATGATGAAACCGAATGCCAAGCCAAGATTAATTAGATGGATTCTACTGTTACAAGAGTTCGAGATAGAAATCGTGGACAC
GAAAGGAGCTAATAACCATGTAGCGGATCATTTATCTAGAATGGAGAACATGGAAGAAAAGGTCAATAGCAAAGAAATTGATGATGCATTTCCGGATGAACAGCTGCTCG
AGATAAACAGCAGTAGCAGCAGCTACAGCAGTAGCAGAATGACAGCAACTCCATGGATGCAGACATAG
Protein sequenceShow/hide protein sequence
MRPSIEEAPQLDLKPLPPNLKYAYLGDKKTLPIIISATLSSTQEDMLLETLKKHKGAIGWTLADIKGISPSLCMHKIQLEEGKVKSIEQQRRLNPMMKEVVRKEILKWLD
AGIIYPIANSSWVNPIQCVPKKGGITVMAKENNELIPTRIVNGWRICMDYRRLNKATCKDHFPLPFIDQMLDRLAGKSHYCFLDGYSGYNQITINPEDQEKTTFTCPYGI
FAFRRMPFGLCNAPATFQRCMMAIFTDMGRFHKDEKNLVLNWEKCHFMVNEGIVLGHKISRRGIEVDRAKIEAIERLNPPTSVKGIKSFLGHAGFYRRFIKDFSKIAKPL
CSLLESNRKFVFDKQCMTAFQALKTALTTAPIMSTLDWNSPFELMCDASGHAVGAMLGQKKGKVLHPIYYASKTLNEAQVNYTTTEKELLAVVFAVEKFRAYLFGAKVKL
YTDHAAIKHLMMKPNAKPRLIRWILLLQEFEIEIVDTKGANNHVADHLSRMENMEEKVNSKEIDDAFPDEQLLEINSSSSSYSSSRMTATPWMQT