CuGenDBv2

Gene ID	CmoCh06G010100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem I assembly protein Ycf4
Genome location	Cmo_Chr06:7939114..7943325
RNA-Seq Expression	CmoCh06G010100
Synteny	CmoCh06G010100
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR003359 - Photosystem I Ycf4, assembly

Homology

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GenBank top hits

e value

%identity

Alignment

AHM91182.1 photosystem I assembly protein ycf4, partial [Lagenaria siceraria]

4.8e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

QKX48484.1 photosystem I assembly protein Ycf4 [Luffa acutangula]

4.8e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

YP_009752086.1 photosystem I assembly protein Ycf4 [Dendrosicyos socotranus]

4.8e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

YP_009752338.1 photosystem I assembly protein Ycf4 [Bryonia marmorata]

4.8e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

YP_009752677.1 photosystem I assembly protein Ycf4 [Ampelosycios humblotii]

4.8e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE82 Photosystem I assembly protein Ycf4

2.3e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

A0A1X9Q1L1 Photosystem I assembly protein Ycf4

2.3e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

A0A218KG38 Photosystem I assembly protein Ycf4

2.3e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

A0A2Z2CQV9 Photosystem I assembly protein Ycf4

2.3e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

X2F3I2 Photosystem I assembly protein Ycf4

2.3e-22

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

SwissProt top hits

e value

%identity

Alignment

A0ZZ46 Photosystem I assembly protein Ycf4

1.2e-23

81.82

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG++LISLFPS QI+FFPQGIVMSFYGIAGLFISSYLWCTI WNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

A4QJC6 Photosystem I assembly protein Ycf4

9.1e-24

75.32

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Query:  SKDDLNIFKEFYILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        S+   N F  F IL   SLGFLLVGTS YLG+++ISLFPS QIIFFPQGIVMSFYGIAGLFIS YLWCTILWNV  G
Subjt:  SKDDLNIFKEFYILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

A4QJL0 Photosystem I assembly protein Ycf4

9.1e-24

75.32

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Query:  SKDDLNIFKEFYILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        S+   N F  F IL   SLGFLLVGTS YLG+++ISLFPS QIIFFPQGIVMSFYGIAGLFIS YLWCTILWNV  G
Subjt:  SKDDLNIFKEFYILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

Q2QD78 Photosystem I assembly protein Ycf4

6.3e-25

86.36

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+DLISLFPS QIIFFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

Q70XZ2 Photosystem I assembly protein Ycf4

9.1e-24

84.62

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Query:  ILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        IL   SLGFLLVGTS YLG++LISLFPS QI+FFPQGIVMSFYGIAGLFISSYLWCTILWNV  G
Subjt:  ILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00520.1 unfolded protein binding

1.4e-24

81.82

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Query:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG
        +IL   SLGFLLVGTS YLG+++ISLFPS QIIFFPQGIVMSFYGIAGLFIS YLWCTILWNV  G
Subjt:  YILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVG

Sequences

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CDS sequence

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ATGTCGAAAGATGATTTAAATATATTCAAAGAATTCTATATATTGCTAACAAGTTCATTAGGGTTTTTGTTGGTTGGAACTTCCTGCTATCTTGGTAAGGATTTGATATC
TTTATTTCCGTCTCACCAAATAATATTTTTTCCACAGGGGATCGTAATGTCTTTCTATGGGATTGCAGGTCTCTTTATTAGCTCCTATTTGTGGTGCACAATTTTGTGGA
ATGTAGTTGTAGGTTTAGGCACCACGGCAGGATGGCATGCACCGTCCCCAAAATTATGGGTCAACATCGGAGTTTGGACCACCATCCTTGATGACATGTGCTGTAGTAGC
TAG

mRNA sequence

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Protein sequence

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MSKDDLNIFKEFYILLTSSLGFLLVGTSCYLGKDLISLFPSHQIIFFPQGIVMSFYGIAGLFISSYLWCTILWNVVVGLGTTAGWHAPSPKLWVNIGVWTTILDDMCCSS

CmoCh06G010100 (gene) of Cucurbita moschata (Rifu) v1 genome