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CmoCh06G010710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G010710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionarabinogalactan peptide 20-like
Genome locationCmo_Chr06:8296612..8297255
RNA-Seq ExpressionCmoCh06G010710
SyntenyCmoCh06G010710
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597108.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]6.6e-3297.56Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]6.0e-2584.81Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

XP_022934029.1 arabinogalactan peptide 20-like [Cucurbita moschata]2.2e-35100Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK

XP_022974647.1 arabinogalactan peptide 16-like [Cucurbita maxima]1.3e-3297.5Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]2.7e-3398.75Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like2.9e-2584.81Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SS ST  AFS  FT FALIFFI+SPLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

A0A6J1E8M6 arabinogalactan peptide 16-like1.2e-2381.48Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SS+ST  AFSG FT F LI FILSPLV AHSS  A APAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSY FFL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

A0A6J1F1F2 arabinogalactan peptide 20-like1.1e-35100Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK

A0A6J1IAU1 arabinogalactan peptide 16-like6.4e-3397.5Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

A0A6J1IQM6 arabinogalactan peptide 20-like8.7e-2277.78Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SS+ST  AFSG FT F LI FILSPL+ AHSS  + APAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASS  FFL
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 166.4e-1466.67Show/hide
Query:  FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

Q8L9T8 Arabinogalactan protein 411.2e-1269.49Show/hide
Query:  FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF IL P+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9FK16 Arabinogalactan protein 221.9e-1067.31Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  IL P+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9M373 Arabinogalactan protein 201.7e-1468.75Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 164.6e-1566.67Show/hide
Query:  FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++  L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

AT3G61640.1 arabinogalactan protein 201.2e-1568.75Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++SP   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

AT5G24105.1 arabinogalactan protein 418.6e-1469.49Show/hide
Query:  FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF IL P+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

AT5G53250.1 arabinogalactan protein 221.4e-1167.31Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  IL P+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGC
TTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCG
ATGCATCTTCCTACCAATTTTTTCTGAAATGA
mRNA sequenceShow/hide mRNA sequence
TTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGC
TCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACG
TGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAAATGAGCTCTAGGATTGTAGCAATGTTGGCGCTGT
TTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGCCAACTTTCTTGCTCTCGTTGTGATAAATGTAGGGTTGAAGAGGAATTTTCATGTTGAGTTT
GCCAGATTTTGATCCATTCTTTTATTTATTGATTGTTTAATCCATTACTTTCAATTTTGT
Protein sequenceShow/hide protein sequence
MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLK