; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G011170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G011170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationCmo_Chr06:8601239..8605802
RNA-Seq ExpressionCmoCh06G011170
SyntenyCmoCh06G011170
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0006378 - mRNA polyadenylation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004133873.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]6.9e-10888.05Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

XP_021293201.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica]6.5e-10685.84Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

XP_022147484.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia]3.1e-10888.5Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

XP_022924789.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata]3.8e-10687.17Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPALQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

XP_031259563.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera]2.9e-10686.28Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPAL PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

TrEMBL top hitse value%identityAlignment
A0A0A0L8Y2 Pre-mRNA cleavage factor Im 25 kDa subunit3.3e-10888.05Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

A0A5D3D0Y8 Pre-mRNA cleavage factor Im 25 kDa subunit3.3e-10888.05Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSP+LQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1D153 Pre-mRNA cleavage factor Im 25 kDa subunit1.5e-10888.5Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1GGL6 Pre-mRNA cleavage factor Im 25 kDa subunit1.5e-10888.5Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1IEE3 Pre-mRNA cleavage factor Im 25 kDa subunit1.5e-10888.5Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    EIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 51.7e-6154.88Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+                    
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS

Query:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
              E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YG
Subjt:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG

Query:  PVISTIPQQLSRFQF
        P+IS++PQ LSRF F
Subjt:  PVISTIPQQLSRFQF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 51.7e-6154.88Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+                    
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS

Query:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
              E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YG
Subjt:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG

Query:  PVISTIPQQLSRFQF
        P+IS++PQ LSRF F
Subjt:  PVISTIPQQLSRFQF

Q5RAI8 Cleavage and polyadenylation specificity factor subunit 51.7e-6154.88Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+                    
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS

Query:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
              E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YG
Subjt:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG

Query:  PVISTIPQQLSRFQF
        P+IS++PQ LSRF F
Subjt:  PVISTIPQQLSRFQF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 21.2e-9978.32Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    E +GLKRKLTSKLG NS AL PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRF FNMI++
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

Q9CQF3 Cleavage and polyadenylation specificity factor subunit 51.7e-6154.88Show/hide
Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+                    
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLS

Query:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
              E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YG
Subjt:  CSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG

Query:  PVISTIPQQLSRFQF
        P+IS++PQ LSRF F
Subjt:  PVISTIPQQLSRFQF

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit8.7e-10178.32Show/hide
Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGEN              
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRL

Query:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD
                    E +GLKRKLTSKLG NS AL PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYD
Subjt:  SKLSLSCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYD

Query:  NVQRYGPVISTIPQQLSRFQFNMITT
        NVQRYGPVISTIPQQLSRF FNMI++
Subjt:  NVQRYGPVISTIPQQLSRFQFNMITT

AT4G29820.1 homolog of CFIM-255.7e-6050.68Show/hide
Query:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSL
        +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+LLLQ  N+  KLPGGRL+PGE                    
Subjt:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSL

Query:  SCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
              ++IEGLKRKL SKL  N       +++GEC+ +WWRPNFET+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + Y
Subjt:  SCSLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY

Query:  GPVISTIPQQLSRFQFNMI
        GP++S IP+ LS+F FNM+
Subjt:  GPVISTIPQQLSRFQFNMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCTTCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCAT
GAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTT
GCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGTTTTTATATACAATTGAAGCCCCCCACATCCGATTGAGTAAATTATCTCTCTCATGTTCCTTAACA
TCCGCAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTCGGTGCAAATTCACCTGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAG
ACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACGAAACCAAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAG
TTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAG
TTCAACATGATCACCACATGA
mRNA sequenceShow/hide mRNA sequence
CTGATCGCAGGTCGCCGAGGTTTTTCTACTTCCTCCCGGCAGCTGCTCAGTGAACGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCACTTTCCAGCTACACCT
TCGGTACTAAAGAGCCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTACATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATT
CTGCTGGTGCAAGAACATAAGCATCCCCATATTCTACTTCTGCAAATTGGAAATACCTTTTGCAAGCTCCCTGGTGGCCGGTTGAAGCCAGGAGAAAATGGTAAGTTTTT
ATATACAATTGAAGCCCCCCACATCCGATTGAGTAAATTATCTCTCTCATGTTCCTTAACATCCGCAGAAATTGAAGGTTTAAAGAGGAAACTGACGAGCAAACTCGGTG
CAAATTCACCTGCCCTCCAGCCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTATTGCCCCCCTCATATAACG
AAACCAAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAGAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAACTCTATGA
CAATGTTCAGAGATACGGACCTGTTATATCGACGATCCCGCAGCAGCTTTCCAGGTTTCAGTTCAACATGATCACCACATGAGCTTGCAAGACAAGAACATAAAATTTGT
GGCATGAACAGACTCCAAATTTGCAGCAGTGAGATATTCTCCTTAGCTTAGTTAGAACTTAAGAGGACATCATGAAACCTTTCTTGAGTTAGGATAGCATACTTATTATA
GACTTTTGTTCTCGACATTTTCGTCGAAGTGTTTATGAGCTAGAACCCGAAAAATTTATATTACTTCTAACGATAGCAGAAAAATGAAAACAGACTGACGGTTTGTGTAA
CGATTTAACTTGATAAAAGTCTTAGATGAGTGTAATTTATGTCTGTTGAATCAATAGTAACAGTGGTCAAGTTGTGGAAACTCAGATTTTCTGGCCTTAGCTCTCTGTTT
CTCAATTGAGTTATTTGTTAGATTTC
Protein sequenceShow/hide protein sequence
MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENGKFLYTIEAPHIRLSKLSLSCSLT
SAEIEGLKRKLTSKLGANSPALQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQ
FNMITT