; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G011810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G011810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionB3 domain-containing protein Os04g0386900-like
Genome locationCmo_Chr06:9018602..9019747
RNA-Seq ExpressionCmoCh06G011810
SyntenyCmoCh06G011810
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147119.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]4.1e-6177.55Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFEL+ECSSS +KFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]8.0e-81100Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]1.2e-7998.64Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFELIECSSSV+KFRVQILRGDIPFELHEKFSGESRNTPILID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]1.2e-7998.64Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMF+PAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]1.2e-6378.23Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQ KPP E   M+PQ+  ILPLSGKPYH  ILSKSHVAPIC++ LPAKFHS+LPAI+IPAVL+C+GKKW IDYYGNRRGKALDTKQWRKFVNDN LK 
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFEL+ECSSS++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein5.4e-5975.51Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQS  KPP E   M+PQN   +PLSGKPYH  ILSKSHVAPI N+ LPAKFHS+LPAI+IPAVL C GKKWKIDY+GNRRGKALD+KQWRKFVNDN LK 
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDA VFEL+ECSSS++KFRVQIL GDIP ELH+KFSGE++ TPI +D
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like3.5e-5873.47Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP EP EM+P+   I PLS KP+HGVIL KSHVAP   M LPAKFHSVLPAI+I  V+YC GK+W++DYYGNRRG+ LDT+ WRKFV++NHLK 
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFEL+ECSSS++KFRVQILRGDIP +LH+KF GESR+TPI ID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

A0A6J1D033 B3 domain-containing protein Os04g0386900-like2.0e-6177.55Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP E T M+P+N  I PLS KP+HGVIL+KSHVAPI NM LPAKFHSVLPAI+I  VLYC GK+W +DYYGNRRGK+LDT+ WRKFVNDNHLK 
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFEL+ECSSS +KFRVQILRGDIP +LH+KFSGES++TPI ID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like3.9e-81100Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like5.6e-8098.64Show/hide
Query:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
        MQSQEKPP EPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC
Subjt:  MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKC

Query:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID
        GDACVFELIECSSSV+KFRVQILRGDIPFELHEKFSGESRNTPILID
Subjt:  GDACVFELIECSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID

SwissProt top hitse value%identityAlignment
Q6AV21 B3 domain-containing protein Os03g06198002.0e-0537.89Show/hide
Query:  SRILPLSGK-PYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRR---GKA-LDTKQWRKFVNDNHLKCGDACVFEL
        S++    GK  + G+ LS  + A     +LP K H  L       VL C+G  W+I+    RR   GK    T  WRKF +DN L+ GD C+FEL
Subjt:  SRILPLSGK-PYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRR---GKA-LDTKQWRKFVNDNHLKCGDACVFEL

Q7XLP4 B3 domain-containing protein Os04g03869001.5e-2138.93Show/hide
Query:  EKPPPEPTEMQPQ---NSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCG
        E  PP P E +P+      +LPL GKPY   I+ KSHV P   + +P  F  +LP+   PA L   G+ W + + G R  + L+   WR F  DN L+ G
Subjt:  EKPPPEPTEMQPQ---NSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCG

Query:  DACVFELIECSSSV---IKFRVQILRGDIPFELHEKFSGESRNTPILID
        D CVFEL+         ++FRVQ+LR +IP  +  +  G +  TPI+ID
Subjt:  DACVFELIECSSSV---IKFRVQILRGDIPFELHEKFSGESRNTPILID

Q8RYD1 B3 domain-containing protein REM163.0e-0632Show/hide
Query:  VILSKSHVAPICNMFLPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD
        V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T  W+KFV DN+L+ GD CVFE     +  +   V I RG+
Subjt:  VILSKSHVAPICNMFLPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123001.9e-1637.93Show/hide
Query:  PPPEPTEMQPQN-SRILPL-SGKPYHGVILSKSHVAPICNMFLPAKFHSVL--PAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGD
        PPP P     ++     PL +G P+   +++KSH+ P   M++P +F   L  P     AVL+  GK W   Y G+ + K LD   W +F  DN L  GD
Subjt:  PPPEPTEMQPQN-SRILPL-SGKPYHGVILSKSHVAPICNMFLPAKFHSVL--PAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGD

Query:  ACVFELIEC-SSSVIKFRVQILRGDIPFELHEKFSGESRNTPILI
        ACVFEL+   ++  ++F+VQILRG +P E+     G + + PILI
Subjt:  ACVFELIEC-SSSVIKFRVQILRGDIPFELHEKFSGESRNTPILI

Arabidopsis top hitse value%identityAlignment
AT1G49480.1 related to vernalization1 17.6e-0531.96Show/hide
Query:  PYHGVILSKSHVAPICNMFLPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV
        PY  V+L  S++   C M+LP+ F    L  I     L    K+W +     + G+A  ++ W +F  +N++  GD CVFEL+     V++   FRV
Subjt:  PYHGVILSKSHVAPICNMFLPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV

AT3G18990.1 AP2/B3-like transcriptional factor family protein7.6e-0531.96Show/hide
Query:  PYHGVILSKSHVAPICNMFLPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV
        P+  V+L  S++   C M+LP+ F    L  I     +    K+W +     + G+A  ++ W +F  +N+L  GD CVFEL+     V+K   FRV
Subjt:  PYHGVILSKSHVAPICNMFLPAKF-HSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIK---FRV

AT4G33280.1 AP2/B3-like transcriptional factor family protein2.1e-0732Show/hide
Query:  VILSKSHVAPICNMFLPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD
        V + +SHV   C + +P K+   +  ++I     V+  +  KW  K + +G R    + T  W+KFV DN+L+ GD CVFE     +  +   V I RG+
Subjt:  VILSKSHVAPICNMFLPAKFHSVLPAIMI---PAVLYCEGKKW--KIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIECSSSVIKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCGCAGGAGAAACCTCCGCCAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGAAAACCCTACCATGGCGTTATTCTTTCTAAGTC
GCATGTCGCTCCCATATGTAATATGTTCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCG
ATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGCGTATTTGAGCTAATAGAA
TGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGA
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAATCGCAGGAGAAACCTCCGCCAGAGCCTACAGAAATGCAGCCGCAAAATAGTAGAATTTTGCCGCTCTCAGGAAAACCCTACCATGGCGTTATTCTTTCTAAGTC
GCATGTCGCTCCCATATGTAATATGTTCTTGCCAGCCAAATTTCATTCTGTTTTACCTGCTATTATGATCCCTGCGGTTCTTTACTGTGAGGGAAAGAAATGGAAGATCG
ATTATTATGGGAATCGACGCGGTAAAGCCCTTGACACGAAACAGTGGAGGAAATTTGTTAATGATAATCATCTCAAGTGTGGAGATGCTTGCGTATTTGAGCTAATAGAA
TGCAGCAGCAGCGTAATCAAGTTCAGAGTTCAAATTCTCAGAGGCGACATCCCTTTTGAGCTGCACGAAAAGTTCAGCGGGGAATCTAGAAACACTCCTATACTCATTGA
CTAGCTAGCCCCTTCTGTGGTCTCTTAGTGTTCAGTAGTTCGGACTTGTCGACAGCATATATGGTTTGGAATCGGACGACCTGTTTGATAACCGTAAGTGGATATGTATG
TTTATCACTAATGCTTATGTCTTAGTCAGGTACATTAGTAGGGAGAAGGAACTGGTTCATTAAGGAGAGATTAGCACTCTCAAATTCGCTGAAGTTGTAATATTACATTG
TCGTTCGTGGTATCTTTGTTAGGGTAAAAACCGAAGACGTTTTCGAAATTTCAT
Protein sequenceShow/hide protein sequence
MQSQEKPPPEPTEMQPQNSRILPLSGKPYHGVILSKSHVAPICNMFLPAKFHSVLPAIMIPAVLYCEGKKWKIDYYGNRRGKALDTKQWRKFVNDNHLKCGDACVFELIE
CSSSVIKFRVQILRGDIPFELHEKFSGESRNTPILID