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CmoCh06G011930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G011930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein 6-like
Genome locationCmo_Chr06:9089597..9090430
RNA-Seq ExpressionCmoCh06G011930
SyntenyCmoCh06G011930
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597226.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4692.5Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMA
        MQAVKEKLHD+SVLRKAKAEAKAEEK       VEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYA NPPTSFVPSAAANISMASGMA
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMA

Query:  LDGTPCTIYMAGTPASKKLL
        LDGTPCTIYMAGTPASKKLL
Subjt:  LDGTPCTIYMAGTPASKKLL

KAG7028698.1 Late embryogenesis abundant protein 6 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-4693.33Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMA
        MQAVKEKLHD+SVLRKAKAEAKAEEK       VEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMA
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMA

Query:  LDGTPCTIYMAGTPASKKLL
        LDGTPCTIYMAGTPASKKLL
Subjt:  LDGTPCTIYMAGTPASKKLL

XP_008438228.1 PREDICTED: uncharacterized protein LOC103483397 [Cucumis melo]3.9e-2563.08Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN
        MQAVKEKLHD+SV+RKAKAEAKAEEK        EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN

Query:  ISMASGMALDGTPCTIYMAG--TPASKKLL
        + +A GM + G P T+ MAG  +PA+KKLL
Subjt:  ISMASGMALDGTPCTIYMAG--TPASKKLL

XP_022974150.1 late embryogenesis abundant protein 6-like [Cucurbita maxima]8.9e-3886.21Show/hide
Query:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT
        +SVLRKAKAEAKAEEK       VEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA YA NPPTSFVPS      AAANISMASGMALDGT
Subjt:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT

Query:  PCTIYMAGTPASKKLL
        PCTIYMAGTPASKKLL
Subjt:  PCTIYMAGTPASKKLL

XP_023538811.1 late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]2.0e-3784.48Show/hide
Query:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT
        +SVLRKAKAEAKAEEK       VEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYA NPPTSFVPS      AAANISMASG+ +DGT
Subjt:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT

Query:  PCTIYMAGTPASKKLL
        PCTIYMAGTPASKKLL
Subjt:  PCTIYMAGTPASKKLL

TrEMBL top hitse value%identityAlignment
A0A0A0L6I7 Uncharacterized protein6.7e-2360.16Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAA------NIS
        MQAV+EKLHD+SV+RKAKAEAKAEEK        EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV           ++ 
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAA------NIS

Query:  MASGMALDGTPCTIYMAG--TPASKKLL
        +A GM + G P T+ MAG  +P +KKLL
Subjt:  MASGMALDGTPCTIYMAG--TPASKKLL

A0A1S3AWI7 uncharacterized protein LOC1034833971.9e-2563.08Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN
        MQAVKEKLHD+SV+RKAKAEAKAEEK        EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN

Query:  ISMASGMALDGTPCTIYMAG--TPASKKLL
        + +A GM + G P T+ MAG  +PA+KKLL
Subjt:  ISMASGMALDGTPCTIYMAG--TPASKKLL

A0A5A7U624 Late embryogenesis abundant protein1.9e-2563.08Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN
        MQAVKEKLHD+SV+RKAKAEAKAEEK        EKELAKARVEVAHEVRLA+EAEA MDLHVA+AGM AE EMA YA     +FV        P  +AN
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV--------PSAAAN

Query:  ISMASGMALDGTPCTIYMAG--TPASKKLL
        + +A GM + G P T+ MAG  +PA+KKLL
Subjt:  ISMASGMALDGTPCTIYMAG--TPASKKLL

A0A6J1CZ67 late embryogenesis abundant protein 6-like3.3e-2261.48Show/hide
Query:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV-PSAAANISMAS-G
        MQAVK+KLHD+S +RKAKAEAKAEEK        EKELAKARVEVAHEVRLA+EAEA MDLHVA+AG  AE EMA YA   PT+FV P    N++ A   
Subjt:  MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFV-PSAAANISMAS-G

Query:  MALDGTPCTIYMAGTPASKKLL
        + + G P T+ M GT   KK+L
Subjt:  MALDGTPCTIYMAGTPASKKLL

A0A6J1ID82 late embryogenesis abundant protein 6-like4.3e-3886.21Show/hide
Query:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT
        +SVLRKAKAEAKAEEK       VEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMA YA NPPTSFVPS      AAANISMASGMALDGT
Subjt:  VSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPS------AAANISMASGMALDGT

Query:  PCTIYMAGTPASKKLL
        PCTIYMAGTPASKKLL
Subjt:  PCTIYMAGTPASKKLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCCGTCAAGGAAAAACTCCACGACGTGAGCGTCTTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTAAACACTAAAAAAGAACGTGTTGAGAAGGA
GCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAA
TGGCTATGTATGCCAAAAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATG
GCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCCGTCAAGGAAAAACTCCACGACGTGAGCGTCTTGCGCAAGGCCAAGGCCGAGGCAAAGGCCGAAGAGAAGGTAAACACTAAAAAAGAACGTGTTGAGAAGGA
GCTAGCAAAGGCAAGAGTGGAGGTGGCTCATGAGGTAAGACTAGCAAAAGAGGCGGAAGCTGAAATGGATCTTCATGTGGCGAGAGCTGGAATGATTGCTGAGAATGAAA
TGGCTATGTATGCCAAAAATCCTCCCACTTCCTTTGTACCTTCCGCCGCCGCCAACATTTCCATGGCCTCCGGCATGGCACTGGACGGAACCCCCTGCACCATCTACATG
GCCGGAACTCCTGCCTCTAAGAAGTTACTGTAG
Protein sequenceShow/hide protein sequence
MQAVKEKLHDVSVLRKAKAEAKAEEKVNTKKERVEKELAKARVEVAHEVRLAKEAEAEMDLHVARAGMIAENEMAMYAKNPPTSFVPSAAANISMASGMALDGTPCTIYM
AGTPASKKLL