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CmoCh06G011960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G011960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g08070, chloroplastic-like
Genome locationCmo_Chr06:9104147..9105406
RNA-Seq ExpressionCmoCh06G011960
SyntenyCmoCh06G011960
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438231.2 PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucumis melo]2.6e-0473.53Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
XP_022147145.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Momordica charantia]2.0e-0473.53Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
XP_031738949.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Cucumis sativus]9.7e-0472.73Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPE
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PE
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPE
XP_038906564.1 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like [Benincasa hispida]6.7e-0576.47Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDNA +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
TrEMBL top hitse value%identityAlignment
A0A0A0L4G7 DYW_deaminase domain-containing protein4.7e-0472.73Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPE
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PE
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPE
A0A1S3AVZ9 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like1.2e-0473.53Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
A0A5A7U1H5 Pentatricopeptide repeat-containing protein1.2e-0473.53Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
A0A6J1CZB8 pentatricopeptide repeat-containing protein At1g08070, chloroplastic-like9.5e-0573.53Show/hide
Query:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
        MN+ G+QKTPGCSS  IDN  +SFLAGDCS+PET
Subjt:  MNQTGVQKTPGCSS--IDNAPYSFLAGDCSYPET
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAGACAGGAGTTCAGAAAACACCTGGTTGCAGTTCGATCGATAATGCCCCATATTCATTTCTGGCGGGAGATTGTTCTTACCCAGAAACAATGCTTAGACATAG
CTTTGAAGTGGCTGAAGCAGGCAAGTTGGGTCTTGCAGTGAGCTTTAGGTCTTCCCACTCTTCGTCTTCAATCCTAGAGAAGTACCTCTCAACCATTGCATCAGTGACAA
GCTCCAGCTTTGAGGGTTCCCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAGACAGGAGTTCAGAAAACACCTGGTTGCAGTTCGATCGATAATGCCCCATATTCATTTCTGGCGGGAGATTGTTCTTACCCAGAAACAATGCTTAGACATAG
CTTTGAAGTGGCTGAAGCAGGCAAGTTGGGTCTTGCAGTGAGCTTTAGGTCTTCCCACTCTTCGTCTTCAATCCTAGAGAAGTACCTCTCAACCATTGCATCAGTGACAA
GCTCCAGCTTTGAGGGTTCCCACTAA
Protein sequenceShow/hide protein sequence
MNQTGVQKTPGCSSIDNAPYSFLAGDCSYPETMLRHSFEVAEAGKLGLAVSFRSSHSSSSILEKYLSTIASVTSSSFEGSH