CuGenDBv2

Gene ID	CmoCh06G013100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2
Genome location	Cmo_Chr06:9807728..9808838
RNA-Seq Expression	CmoCh06G013100
Synteny	CmoCh06G013100
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582410.1 hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia]

8.5e-33

83.16

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSC+IM
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

KAG6597344.1 hypothetical protein SDJN03_10524, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-41

98.9

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Query:  MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAE+LEFQPSDVSDSGDEEDDSCSCIIM
Subjt:  MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

XP_004134046.1 uncharacterized protein LOC101205158 [Cucumis sativus]

6.5e-33

83.87

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Query:  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSCIIM
Subjt:  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

XP_022924268.1 uncharacterized protein LOC111431793 [Cucurbita moschata]

8.5e-33

83.16

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSC+IM
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

XP_038897861.1 uncharacterized protein LOC120085750 [Benincasa hispida]

1.7e-33

83.16

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        M GDSKDV    E+ +DS A GEVGD  NGE+YSESNALLPPRRGGMSRKSNKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSCIIM
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L701 Uncharacterized protein

3.2e-33

83.87

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Query:  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSCIIM
Subjt:  GDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

A0A1S3AX40 uncharacterized protein LOC103483558 isoform X2

6.6e-31

82.42

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCS
        M GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCS
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCS

A0A5A7U1V8 Uncharacterized protein

6.6e-31

82.42

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCS
        M GDSKDV    E+ +DS AAGEVGD  NGE+YSESNALLPPRRGGMSRK NKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCS
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCS

A0A6J1EBY1 uncharacterized protein LOC111431793

4.1e-33

83.16

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        MGGDS+ V    E +VDS AAGEVGD  NGED SESNALLPPRRGGMSRKSNKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSC+IM
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

A0A6J1INK9 uncharacterized protein LOC111479120

2.1e-32

82.11

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Query:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        MGGDS+ V    E +VDS AAGEVGD  N ED SESNALLPPRRGGMSRKSNKPRMKVRW DSNGNNLAE+LEFQPSDVSDSGDEE DSCSC+IM
Subjt:  MGGDSKDV----EEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34010.1 unknown protein

4.0e-04

48.89

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Query:  RMKVRWTDSNGNNLAEVLEFQPSDVSDSGDE----EDDSCSCIIM
        R KV+W D+ G  +AEV EF+PS+V +S DE       SC C IM
Subjt:  RMKVRWTDSNGNNLAEVLEFQPSDVSDSGDE----EDDSCSCIIM

AT1G55475.1 unknown protein

4.0e-04

41.86

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Query:  KPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        + + KV+W D  G  LAE+ EF+PSD  D   +   +C CII+
Subjt:  KPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

AT2G33390.1 unknown protein

5.9e-16

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Query:  EAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM
        +A+ S+ + E+ D    E+ SES  LLPPR+GGMSR ++K +  V+W D  G+NLAEVL ++PS+VSD+ D++ DSC C IM
Subjt:  EAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

Sequences

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CDS sequence

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ATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGGCGAAGATTACAGTGAATCGAATGCTCTATTGCC
GCCCCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATAACCTAGCGGAGGTTTTGGAGTTTCAACCGAGCG
ATGTGAGCGATTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAG

mRNA sequence

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CGACAGCGCGCCGCTCCATCGCCGTTCACAGTTTTGGGTTAACCCATTTTCTTCTTGGGGTTTGGAGGCGATTTTATTTTCTGTCACTTTCTCGGGAATCTTTCGATTCT
AAGCCTTATTTTCTTTGTTTGGTTCAAATTTTAGATCGAGGGTTTTGGTTTTCGAAGAGGGGTTTGTGATGGGGTTGTTTGGTTCATAAATTTTGAACCCGTGAGCCCTC
ACCCGGTTCTGGATTTGTGATTTTTGGTGAACTATGGGTGGCGATTCTAAGGATGTTGAAGAGGCTGTGGATTCTGTGGCTGCCGGAGAAGTTGGGGATTCCGGTAACGG
CGAAGATTACAGTGAATCGAATGCTCTATTGCCGCCCCGGCGTGGCGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGACTGATAGTAATGGTAATA
ACCTAGCGGAGGTTTTGGAGTTTCAACCGAGCGATGTGAGCGATTCGGGGGACGAGGAGGACGATTCTTGCAGCTGTATAATTATGTAGATTATTACATCAAATATGTGT
ATAATGACAGGAAGCTGAGAGTCATTGGTGGTGTTTCTGACTGTATACTGATTGCCTTACTACGACGACGAGTTCTCGAAGATTGAGGGGTTAATACGTCGATATTCCTT
GCGGTGTTTGGTGATGTGTGTTCGGGGTGTACTGTTTTGGTTTTCGAGTTTGTAAGATCATATCGATGATGCGAATAATGATGTTATTATAACAAATATTCAGATTAGTT
GAGCGTTGTACTATTGTTTATACCTCTAGATCTTGAGAGGCCGTTAACGTTTTTATTTGGTTTAATAATAAATTTAATCCATATGATTCATA

Protein sequence

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MGGDSKDVEEAVDSVAAGEVGDSGNGEDYSESNALLPPRRGGMSRKSNKPRMKVRWTDSNGNNLAEVLEFQPSDVSDSGDEEDDSCSCIIM

CmoCh06G013100 (gene) of Cucurbita moschata (Rifu) v1 genome