; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G013250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G013250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionC2H2-type domain-containing protein
Genome locationCmo_Chr06:9881886..9882632
RNA-Seq ExpressionCmoCh06G013250
SyntenyCmoCh06G013250
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049241.1 hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa]8.2e-7064Show/hide
Query:  AFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSR
        AF LQ P   LFALFFLT+FSPS + PW+SS + KSG NPSL+++L  S E+SSR P R++TIFGAPCGLCGQVIFGSEALNHHYNYHFLQN+LAS+   
Subjt:  AFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSR

Query:  LVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQN
          P S  S RPP    +FHGQASASREPQ+TLN+ LTMPP     SLRS+    +DMAH LPLHPLLA+PPP  RT+T N +    N+  A QR QGNQ 
Subjt:  LVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQN

Query:  QRNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
        + NNG  R    + A+EQ QP Q+VIDL S+EENDCSSDGS+GLDLTLSL
Subjt:  QRNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

KAG6582389.1 hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2037.87Show/hide
Query:  FLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQN-----DLASYGSRLVPSSASSQR
        FL    PS  FPW SSP++KS WNPS +ELL  S + S R P RK+TIFGAPCGLCGQ I  SE LNHH     L +      + S   +L+ ++   Q 
Subjt:  FLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQN-----DLASYGSRLVPSSASSQR

Query:  PPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEDAAGQRWQGNQNQRNNGGARTTAARS
         P W      +         T N+ L +       S + +    VDMAH LPLHPLLAQPPP     T N +      + W+GN                
Subjt:  PPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEDAAGQRWQGNQNQRNNGGARTTAARS

Query:  AAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLS
                          EN+CSS GS+ LDLTLS
Subjt:  AAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLS

KAG6597359.1 hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia]6.2e-12694.74Show/hide
Query:  AAFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGS
        ++F L   L  L  LFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGE SSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGS
Subjt:  AAFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGS

Query:  RLVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEDAAGQRWQGNQNQRN
        RLVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRR TTANGVNEDAAGQRWQGNQNQRN
Subjt:  RLVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEDAAGQRWQGNQNQRN

Query:  NGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
        NGGARTT+ARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
Subjt:  NGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

KGN56847.1 hypothetical protein Csa_010766 [Cucumis sativus]4.1e-7767.07Show/hide
Query:  FFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRL
        F LQ P   LFALFFLT+FSPSL+FP +SS + +S  NPSL  +L  S E+S RP RRK+TIFGAPCGLCGQVIFGSEALNHHYNYHFLQN+LAS+    
Subjt:  FFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRL

Query:  VPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQNQ
         PSS  SQRPP+W++YFHGQASASREPQ+TLN+ LTMPP     SLRSY    +DMAH LPLHPLLAQPPP  RT+TAN +    N+  AG R QGNQ Q
Subjt:  VPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQNQ

Query:  RNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
         NNGG R    + A+E+ QP Q+VIDLNS EENDCSSD S+GLDLTLSL
Subjt:  RNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

TrEMBL top hitse value%identityAlignment
A0A0A0L892 C2H2-type domain-containing protein2.0e-7767.07Show/hide
Query:  FFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRL
        F LQ P   LFALFFLT+FSPSL+FP +SS + +S  NPSL  +L  S E+S RP RRK+TIFGAPCGLCGQVIFGSEALNHHYNYHFLQN+LAS+    
Subjt:  FFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRL

Query:  VPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQNQ
         PSS  SQRPP+W++YFHGQASASREPQ+TLN+ LTMPP     SLRSY    +DMAH LPLHPLLAQPPP  RT+TAN +    N+  AG R QGNQ Q
Subjt:  VPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQNQ

Query:  RNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
         NNGG R    + A+E+ QP Q+VIDLNS EENDCSSD S+GLDLTLSL
Subjt:  RNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

A0A5A7U6I9 C2H2-type domain-containing protein4.0e-7064Show/hide
Query:  AFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSR
        AF LQ P   LFALFFLT+FSPS + PW+SS + KSG NPSL+++L  S E+SSR P R++TIFGAPCGLCGQVIFGSEALNHHYNYHFLQN+LAS+   
Subjt:  AFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSR

Query:  LVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQN
          P S  S RPP    +FHGQASASREPQ+TLN+ LTMPP     SLRS+    +DMAH LPLHPLLA+PPP  RT+T N +    N+  A QR QGNQ 
Subjt:  LVPSSASSQRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGV----NEDAAGQRWQGNQN

Query:  QRNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL
        + NNG  R    + A+EQ QP Q+VIDL S+EENDCSSDGS+GLDLTLSL
Subjt:  QRNNGGARTTAARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCTTCTTCCTTCAAGCTCCTCTGTTTGCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCACCTTCTCTGGCTTTCCCATGGAGTTCTTCCCCCTATGAAAA
ATCTGGTTGGAACCCATCATTAGAAGAGCTGTTATCGGCCTCCGGCGAGGCTTCTTCCCGGCCGCCTCGCCGGAAAAGCACAATTTTTGGTGCCCCTTGTGGGCTCTGTG
GTCAAGTGATATTTGGCTCTGAAGCTCTAAATCACCATTACAATTACCACTTCTTGCAGAATGATCTTGCTTCTTATGGTAGCCGCTTGGTTCCTTCTTCGGCAAGCTCT
CAGCGGCCGCCGGTATGGACCGATTATTTCCATGGACAAGCCTCTGCTTCTCGAGAACCCCAAATTACGCTTAACAATTGTTTGACGATGCCACCGCCGCGGCAGCCGTC
GTCTCTTAGAAGCTACCCCAGCCCCACCGTCGACATGGCTCACTTATTACCGCTTCATCCGTTGTTGGCCCAACCGCCGCCGCCGCGTCGGACTACCACCGCCAACGGTG
TTAACGAGGATGCAGCGGGGCAGAGGTGGCAGGGGAACCAAAATCAAAGGAATAATGGTGGCGCAAGGACGACCGCTGCCCGGTCGGCGGCGGAGCAGCGGCAGCCACGG
CAAGAAGTGATTGATCTCAACAGTACTGAGGAGAATGATTGTAGCTCTGATGGGTCAGATGGCTTGGATTTGACATTAAGCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCTTCTTCCTTCAAGCTCCTCTGTTTGCTCTGTTTGCTCTGTTTTTCCTCACAGCCTTCTCACCTTCTCTGGCTTTCCCATGGAGTTCTTCCCCCTATGAAAA
ATCTGGTTGGAACCCATCATTAGAAGAGCTGTTATCGGCCTCCGGCGAGGCTTCTTCCCGGCCGCCTCGCCGGAAAAGCACAATTTTTGGTGCCCCTTGTGGGCTCTGTG
GTCAAGTGATATTTGGCTCTGAAGCTCTAAATCACCATTACAATTACCACTTCTTGCAGAATGATCTTGCTTCTTATGGTAGCCGCTTGGTTCCTTCTTCGGCAAGCTCT
CAGCGGCCGCCGGTATGGACCGATTATTTCCATGGACAAGCCTCTGCTTCTCGAGAACCCCAAATTACGCTTAACAATTGTTTGACGATGCCACCGCCGCGGCAGCCGTC
GTCTCTTAGAAGCTACCCCAGCCCCACCGTCGACATGGCTCACTTATTACCGCTTCATCCGTTGTTGGCCCAACCGCCGCCGCCGCGTCGGACTACCACCGCCAACGGTG
TTAACGAGGATGCAGCGGGGCAGAGGTGGCAGGGGAACCAAAATCAAAGGAATAATGGTGGCGCAAGGACGACCGCTGCCCGGTCGGCGGCGGAGCAGCGGCAGCCACGG
CAAGAAGTGATTGATCTCAACAGTACTGAGGAGAATGATTGTAGCTCTGATGGGTCAGATGGCTTGGATTTGACATTAAGCCTTTGA
Protein sequenceShow/hide protein sequence
MAAFFLQAPLFALFALFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGEASSRPPRRKSTIFGAPCGLCGQVIFGSEALNHHYNYHFLQNDLASYGSRLVPSSASS
QRPPVWTDYFHGQASASREPQITLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRTTTANGVNEDAAGQRWQGNQNQRNNGGARTTAARSAAEQRQPR
QEVIDLNSTEENDCSSDGSDGLDLTLSL