CuGenDBv2

Gene ID	CmoCh06G013770
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	meiotic recombination protein DMC1 homolog
Genome location	Cmo_Chr06:10144021..10144893
RNA-Seq Expression	CmoCh06G013770
Synteny	CmoCh06G013770
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0007131 - reciprocal meiotic recombination (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000150 - recombinase activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domains	IPR010995 - DNA repair Rad51/transcription factor NusA, alpha-helical

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597413.1 hypothetical protein SDJN03_10593, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-37

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

KAG7028871.1 hypothetical protein SDJN02_10053, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-37

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

XP_022138203.1 LOW QUALITY PROTEIN: meiotic recombination protein DMC1 homolog [Momordica charantia]

2.4e-37

92.47

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

XP_022947681.1 meiotic recombination protein DMC1 homolog [Cucurbita moschata]

1.4e-37

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

XP_022974436.1 meiotic recombination protein DMC1 homolog isoform X1 [Cucurbita maxima]

1.4e-37

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5D5 Uncharacterized protein

4.7e-39

93.68

Show/hide

Query:  MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        MLLRAEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

A0A6J1CCE5 LOW QUALITY PROTEIN: meiotic recombination protein DMC1 homolog

1.2e-37

92.47

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQ+VEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

A0A6J1G745 meiotic recombination protein DMC1 homolog

6.8e-38

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

A0A6J1IA86 meiotic recombination protein DMC1 homolog isoform X2

6.8e-38

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

A0A6J1IBC8 meiotic recombination protein DMC1 homolog isoform X1

6.8e-38

93.55

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L+AEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

SwissProt top hits

e value

%identity

Alignment

B8BM09 Meiotic recombination protein DMC1 homolog A

4.3e-29

76.47

Show/hide

Query:  QLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        QLQ+++ E IE+E++ FE+IDKL S GIN+GDVKKLQDAGIYTCNGLMMHTKK LTGIKGLSEAKVDKICEAAEKL+    IT S
Subjt:  QLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

P37384 Meiotic recombination protein DMC1 homolog

7.3e-29

74.19

Show/hide

Query:  RAEEQSQQLQIVEREDI-EDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        R  E   QLQ+++R++  E+E+D FE+IDKL S GINAGDVKKLQDAGIYTCNGLMMHTKK+LTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  RAEEQSQQLQIVEREDI-EDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

Q39009 Meiotic recombination protein DMC1 homolog

1.1e-29

77.65

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV
        L+AEE S Q+Q+VERE+ ++++DLFE IDKL + GINAGDVKKLQ+AGI+TCNGLMMHTKK+LTGIKGLSEAKVDKICEAAEK+V
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV

Q7GBF8 Meiotic recombination protein DMC1 homolog A

4.3e-29

76.47

Show/hide

Query:  QLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        QLQ+++ E IE+E++ FE+IDKL S GIN+GDVKKLQDAGIYTCNGLMMHTKK LTGIKGLSEAKVDKICEAAEKL+    IT S
Subjt:  QLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

Q96449 Meiotic recombination protein DMC1 homolog

1.5e-34

81.72

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS
        L++EE S QLQ+VEREDI+D++DLFEAIDKL + GINAGDVKKLQDAGIYTCNGLMMHTKK+LTGIKGLSEAKVDKICEAAEKLV    IT S
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTS

Arabidopsis top hits

e value

%identity

Alignment

AT3G22880.1 DNA repair (Rad51) family protein

8.0e-31

77.65

Show/hide

Query:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV
        L+AEE S Q+Q+VERE+ ++++DLFE IDKL + GINAGDVKKLQ+AGI+TCNGLMMHTKK+LTGIKGLSEAKVDKICEAAEK+V
Subjt:  LRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLV

AT5G20850.1 RAS associated with diabetes protein 51

2.7e-10

41.3

Show/hide

Query:  EQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTSVIH
        EQ +    V+++D E+       +++L + GI + DVKKL+DAG+ T  G+    +K L  IKG+S+AKVDKI EAA KLV     + S +H
Subjt:  EQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTSVIH

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTGCTCAGAGCGGAAGAACAGAGCCAGCAACTTCAGATTGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGATAAACTGACTTCTCATGG
AATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGCACTTGACAGGGATAAAAGGTTTATCCGAAG
CGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGGTCAGTGACTCAATCACCACTTCTGTTATCCACGATGCGTGCAATGGTTTACACAATGATGTCATAATG
CGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLLRAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVVSDSITTSVIHDACNGLHNDVIM
R

CmoCh06G013770 (gene) of Cucurbita moschata (Rifu) v1 genome