; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G013970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G013970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RDM1-like
Genome locationCmo_Chr06:10236373..10237768
RNA-Seq ExpressionCmoCh06G013970
SyntenyCmoCh06G013970
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597432.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]3.0e-9599.43Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSID FKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]3.6e-96100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_022951070.1 protein RDM1-like [Cucurbita moschata]3.6e-96100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_022974457.1 protein RDM1-like [Cucurbita maxima]3.7e-9397.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSE MLIKRAEMYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]4.0e-9598.85Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTS+GMLIKRAEMYQEYMKQIPIPAHRGSVIPF TWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A6J1E3H6 protein RDM1-like3.0e-8890.23Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVD+ISSGESSSSDSEIGGQNDGFEFKPS+DD KIPAKE+TSEG+L KRAEMYQEYMKQIPIPAHRGSVIPF TW+GLGKSIKQLY QPL 
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGS DEYKPLDT+IHPSKAEAT+W+VEEIHRRTSSHHHVAKLWLSD MH  YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1GHM4 protein RDM1-like1.7e-96100Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1GV10 protein RDM17.8e-8993.1Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1IGA1 protein RDM1-like1.8e-9397.7Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSE MLIKRAEMYQEYMKQIPIPA+RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
A0A6J1INZ9 protein RDM1-like6.0e-8993.1Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFKIPAKEMT+EGMLIKRAEMYQEYMKQI IPA RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLH

Query:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNIQLKQWDQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM13.9e-4554.43Show/hide
Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +RGS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF

Query:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
        G+  E + LD+IIHP+KAEAT+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Subjt:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 12.8e-4654.43Show/hide
Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQ+PIP +RGS+IPF +W+GL  S+KQLY QPLHYLTN+ L++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQWDQLRF

Query:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ
        G+  E + LD+IIHP+KAEAT+WLVEEIHR T SH H+A LW SD M+  ++D IFP+
Subjt:  GSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGGCCAATGCCGTGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATTTGAGTTCAAGCC
CTCTATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCCCGATCCCGGCAC
ACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAGCTCAAACAGTGG
GATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATCGGCGCAC
CTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
GGATTCGTTGCTGAGCTCTGCTGATTATCCGTGGCGAAACCCAGATCGCAGAAGAGTTTCGGCTTTACGATTCGAAGCTCTCCCTTTTTTCTCAAAATACGAAGAGTTCC
TTTCTTTACAAAATGAAGAGGCCAATGCCGTGGAATGAACAGGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAACGATGGATT
TGAGTTCAAGCCCTCTATTGACGACTTCAAAATTCCTGCAAAGGAGATGACATCTGAAGGCATGTTGATTAAAAGGGCAGAAATGTATCAAGAATACATGAAACAGATCC
CGATCCCGGCACACCGTGGATCTGTTATACCGTTTAGAACATGGATGGGACTAGGCAAATCTATAAAGCAACTTTATGAACAGCCTTTGCATTACCTGACTAACATTCAG
CTCAAACAGTGGGATCAATTAAGATTCGGAAGTGTGGATGAATATAAGCCATTGGATACCATAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGAT
TCATCGGCGCACCTCGTCACATCATCATGTTGCTAAGCTCTGGTTATCGGACTCGATGCACGAAGTGTATGTTGACTCCATTTTCCCCCAACTATGAAAGCTGCTGCTCT
CAGTTAAGTTCTGTTCTGTGCTGATTATAACATATTTCTAGTAGACTAACTTGTCATTGACAATGTGAATCGTAATAGAAACAACATAGTTCTTTAGTCACACTGCTCTT
GAATGTGTAGGTTTCTTATCAACTGACATAGAACATGCTCTACCATTTCTTCCTCTGTCCATTGTTGTGTC
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKIPAKEMTSEGMLIKRAEMYQEYMKQIPIPAHRGSVIPFRTWMGLGKSIKQLYEQPLHYLTNIQLKQW
DQLRFGSVDEYKPLDTIIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDSMHEVYVDSIFPQL