; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G014100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G014100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpre-rRNA-processing protein TSR2 homolog
Genome locationCmo_Chr06:10286266..10288127
RNA-Seq ExpressionCmoCh06G014100
SyntenyCmoCh06G014100
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR019398 - Pre-rRNA-processing protein TSR2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597442.1 hypothetical protein SDJN03_10622, partial [Cucurbita argyrosperma subsp. sororia]2.4e-6477.17Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLE-NLRHEHLLLS
        AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNS MLPSIAAPL V +     +    LLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLE-NLRHEHLLLS

Query:  FNTEFEDGSIEQVAKQLLMVYEENLNFSLEFLTSYASCCVLLHFLIPAKIIRCLILLLSPFSLNNVILLSYDYDEGMITGQSKS
        ++ +  +          L       NFSLEFLTSYASCCVLLHFLIPAKIIRCLI LLSPF LNNVILLSYDYDEGMITGQSKS
Subjt:  FNTEFEDGSIEQVAKQLLMVYEENLNFSLEFLTSYASCCVLLHFLIPAKIIRCLILLLSPFSLNNVILLSYDYDEGMITGQSKS

KAG7028903.1 hypothetical protein SDJN02_10085, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-5094.64Show/hide
Query:  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRHE-HLLLS
        AGSISSLEMAISSVFSRWDGLQMAID+KWGGGDSHQK LNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNS MLPSIAAPLYVEDLENL HE HLLLS
Subjt:  AGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRHE-HLLLS

Query:  FNTEFEDGSIEQ
        FNTE EDGSIEQ
Subjt:  FNTEFEDGSIEQ

XP_008438674.1 PREDICTED: pre-rRNA-processing protein TSR2 homolog isoform X2 [Cucumis melo]3.5e-3967.15Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEP +GLTS N+KAGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK                            PLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL
        LENL HE LLLSFNTE EDGSIEQVA+QL+M+YEENL
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL

XP_022949537.1 uncharacterized protein LOC111452853 [Cucurbita moschata]2.0e-63100Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQV
        LENLRHEHLLLSFNTEFEDGSIEQV
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQV

XP_022973690.1 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR2 [Cucurbita maxima]4.2e-4572.14Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEPNNGLTS NHKAGSISSL+MAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVF+WFSQSKR                          +PLYV+D
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENLNFS
        LENL HEHLLLSFNTE EDGSIEQVA++L+MVYE NL  S
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENLNFS

TrEMBL top hitse value%identityAlignment
A0A0A0L7I9 Uncharacterized protein2.9e-3966.42Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEP +GLTS N+KAGS+S+L+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK                            PLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL
        LENL HE LLLSFNTE EDGSIEQVA+QL+M+YEENL
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL

A0A1S3AWZ6 pre-rRNA-processing protein TSR2 homolog isoform X21.7e-3967.15Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEP +GLTS N+KAGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK                            PLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL
        LENL HE LLLSFNTE EDGSIEQVA+QL+M+YEENL
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL

A0A5D3D3A3 Pre-rRNA-processing protein TSR2-like protein isoform X21.7e-3967.15Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEP +GLTS N+KAGS+SSL+MAISSVFSRWDGLQMAI+N+WGG DSHQKSLNL SDVFSWFS SK                            PLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL
        LENL HE LLLSFNTE EDGSIEQVA+QL+M+YEENL
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENL

A0A6J1GCB9 uncharacterized protein LOC1114528539.8e-64100Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQV
        LENLRHEHLLLSFNTEFEDGSIEQV
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQV

A0A6J1IC01 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR22.0e-4572.14Show/hide
Query:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED
        MEPNNGLTS NHKAGSISSL+MAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVF+WFSQSKR                          +PLYV+D
Subjt:  MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVED

Query:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENLNFS
        LENL HEHLLLSFNTE EDGSIEQVA++L+MVYE NL  S
Subjt:  LENLRHEHLLLSFNTEFEDGSIEQVAKQLLMVYEENLNFS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G22510.1 Pre-rRNA-processing protein TSR2, conserved region7.2e-1943.55Show/hide
Query:  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRHEHLLLSFNTEF
        S L+  I  + SRW GLQMA+ N+WGG DS +KS  LA ++F   SQS                              + VE++ENL HE LLLSFNTE 
Subjt:  SSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRHEHLLLSFNTEF

Query:  EDGSIEQVAKQLLMVYEENLNFSL
        EDGSIE+VA+QL++++EE+L  +L
Subjt:  EDGSIEQVAKQLLMVYEENLNFSL

AT5G27990.1 Pre-rRNA-processing protein TSR2, conserved region4.1e-0629.13Show/hide
Query:  LEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRH--EHLLLSFNTEF
        L+  I  +  RW  ++ A++N WGG DS  K+    + VF +F QSK                               V+D+E L    +  L   NT  
Subjt:  LEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRH--EHLLLSFNTEF

Query:  EDGSIEQVAKQLLMVYEENLNFSLEFL
        EDGS+++VA  L+ +YE+  N + E L
Subjt:  EDGSIEQVAKQLLMVYEENLNFSLEFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAAATAATGGATTAACCTCAATCAATCACAAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCAGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCT
TCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATTCCGCTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCGCCATGAACACCTGCTG
CTCTCCTTCAACACCGAGTTCGAAGATGGTAGCATCGAACAGGTAGCAAAGCAATTGCTGATGGTATACGAAGAAAATTTGAACTTTTCGCTCGAGTTCCTAACTTCCTA
TGCTTCCTGCTGTGTTCTTCTACATTTTCTTATTCCCGCGAAAATTATTCGCTGCTTGATCCTTCTGCTTTCTCCATTCTCTCTCAACAATGTTATACTGTTAAGTTATG
ATTATGATGAAGGAATGATTACTGGACAAAGCAAATCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAAATAATGGATTAACCTCAATCAATCACAAGGCAGGATCAATCTCCAGCCTCGAAATGGCTATTTCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGC
CATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCAGATGTCTTCTCTTGGTTCTCTCAATCCAAACGTTGTTACATTAAAATTACCT
TCCGGAGTTTCTCGATCTTCTTCCATGGATCTAATTCCGCTATGCTTCCTTCCATTGCAGCTCCCCTGTACGTGGAAGATCTGGAAAATTTGCGCCATGAACACCTGCTG
CTCTCCTTCAACACCGAGTTCGAAGATGGTAGCATCGAACAGGTAGCAAAGCAATTGCTGATGGTATACGAAGAAAATTTGAACTTTTCGCTCGAGTTCCTAACTTCCTA
TGCTTCCTGCTGTGTTCTTCTACATTTTCTTATTCCCGCGAAAATTATTCGCTGCTTGATCCTTCTGCTTTCTCCATTCTCTCTCAACAATGTTATACTGTTAAGTTATG
ATTATGATGAAGGAATGATTACTGGACAAAGCAAATCCTAA
Protein sequenceShow/hide protein sequence
MEPNNGLTSINHKAGSISSLEMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFSWFSQSKRCYIKITFRSFSIFFHGSNSAMLPSIAAPLYVEDLENLRHEHLL
LSFNTEFEDGSIEQVAKQLLMVYEENLNFSLEFLTSYASCCVLLHFLIPAKIIRCLILLLSPFSLNNVILLSYDYDEGMITGQSKS