CuGenDBv2

Gene ID	CmoCh06G014130
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Protein Ycf2
Genome location	Cmo_Chr06:10292258..10293300
RNA-Seq Expression	CmoCh06G014130
Synteny	CmoCh06G014130
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QWV60883.1 hypothetical protein RF2 [Cucurbita ficifolia]

1.7e-34

93.75

Show/hide

Query:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQEK+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

YP_009447494.1 Ycf2 [Cucurbita maxima]

1.7e-34

93.75

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Query:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQEK+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

YP_009447579.1 Ycf2 [Cucurbita moschata]

1.7e-34

93.75

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Query:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQEK+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

YP_009505123.1 Ycf2 [Cucurbita pepo]

5.5e-33

91.46

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Query:  CIYKRWFIKNMQE--KYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQE  K+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQE--KYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

YP_009526345.1 hypothetical chloroplast RF2 [Hemsleya lijiangensis]

2.3e-31

87.65

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEKYFGLLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

TrEMBL top hits

e value

%identity

Alignment

A0A2H4T233 Protein Ycf2

8.2e-35

93.75

Show/hide

Query:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQEK+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

A0A2H4T2B6 Protein Ycf2

8.2e-35

93.75

Show/hide

Query:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQEK+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

A0A344AXU5 Protein Ycf2

2.7e-33

91.46

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Query:  CIYKRWFIKNMQE--KYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        CIYKRWFIKNMQE  K+FGLLI+HQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EMFV
Subjt:  CIYKRWFIKNMQE--KYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

A0A346TM85 Protein Ycf2

1.1e-31

87.65

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEKYFGLLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

E5KUD9 Protein Ycf2

2.5e-31

89.87

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV
        IYKRWFIKN QEK+FGLLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM V
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFV

SwissProt top hits

e value

%identity

Alignment

B1A978 Protein Ycf2

9.7e-33

85.19

Show/hide

Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEK+F LLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

Q09FY5 Protein Ycf2

1.1e-31

88.31

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEM
        IYKRWFIKN QEK+F LLI+ QRWLRTNSSLSNG FRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEM

Q09MB4 Protein Ycf2

9.7e-33

85.19

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEK+F LLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQ+TKTLLRKRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

Q09WV7 Protein Ycf2

3.7e-32

89.61

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEM
        IYKRWFIKN QEKYF LLI  QRWLRTNSSLSNGFFRSNTPSESYQYLS LFLSNGTLLDQ+TKTLLRKRWLF  EM
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEM

Q49KT6 Protein Ycf2

4.8e-32

83.95

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Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEK+F LLI+ QRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNG LLDQ+TKTLLRKRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

8.4e-32

80.25

Show/hide

Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEK+F LLI  QRWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD++TKTLL+KRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

8.4e-32

80.25

Show/hide

Query:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY
        IYKRWFIKN QEK+F LLI  QRWLRTNSSLSNGFFRSNT SESYQYLSNLF+SNGTLLD++TKTLL+KRWLF  EM + +
Subjt:  IYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQITKTLLRKRWLFRGEMFVEY

Sequences

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CDS sequence

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ATGGGAGAAAGCTTAGTAGTTGGTGGAAGTTGGAATATCCATTCTTTTTCCTATTCAAAGATTAGCCTTTTGTCTTTGTGTTTTCGCATCAAGAATTTTTTACAGACAAA
GAGATGTCAAATGGGCTGCTTACTTCCCTGTATATATAAACGCTGGTTTATCAAGAATATGCAAGAAAAGTACTTCGGATTGTTGATTAATCACCAAAGATGGCTTAGAA
CCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAAAGTTATCAGTATTTATCAAATTTGTTCCTATCTAACGGAACGCTATTGGATCAAATAACA
AAGACATTGTTGAGAAAAAGATGGCTTTTCCGAGGTGAAATGTTTGTTGAGTATCGAAAG

mRNA sequence

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Protein sequence

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MGESLVVGGSWNIHSFSYSKISLLSLCFRIKNFLQTKRCQMGCLLPCIYKRWFIKNMQEKYFGLLINHQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQIT
KTLLRKRWLFRGEMFVEYRK

CmoCh06G014130 (gene) of Cucurbita moschata (Rifu) v1 genome