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CmoCh06G014940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G014940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S21
Genome locationCmo_Chr06:10732045..10734481
RNA-Seq ExpressionCmoCh06G014940
SyntenyCmoCh06G014940
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]3.3e-3584.21Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]7.3e-3583.16Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRAQ             GDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]4.6e-3786.32Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]1.0e-3685.26Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ             GDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

XP_023538827.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo]8.6e-3683.16Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLD+NGIYTGQFSTFALCGFIRAQ             GDADSALDRLWHKKK EVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S211.6e-3584.21Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

A0A1S4DSM1 40S ribosomal protein S211.6e-3584.21Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

A0A5D3CXC9 40S ribosomal protein S211.6e-3584.21Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLW KKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

A0A6J1GFE6 40S ribosomal protein S212.2e-3786.32Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ             GDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

A0A6J1IJN4 40S ribosomal protein S214.9e-3785.26Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGFIRAQ             GDADSALDRLWHKKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S211.7e-3168.42Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ             GDADSALDRLW K+K EV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

Q3E902 40S ribosomal protein S21-24.9e-3473.4Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ             GDADS +DRLW KKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ

Q41852 40S ribosomal protein S211.5e-3067.02Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ             GDADS+LDRLW KKK E+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ

Q9M337 40S ribosomal protein S21-17.1e-3369.47Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ             GDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

Q9SMI2 40S ribosomal protein S212.5e-2258.82Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRL
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+              G++D+AL+RL
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRL

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e5.0e-3469.47Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ             GDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e5.0e-3469.47Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ             GDADS +DRLW KKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ

AT5G27700.1 Ribosomal protein S21e3.5e-3573.4Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ             GDADS +DRLW KKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAAATCACGGAGCTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGG
GCATTTGGATGAGAATGGCATCTACACTGGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGTGATTGTTATTTATCTATCTGTCTCTGTTTTTGGAT
TTGGAGATGCTGACAGCGCACTGGATCGGCTCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAG
mRNA sequenceShow/hide mRNA sequence
CGCCTCTTTCTTCCTCTCGGATAGCTCGCTTTCCTCTTTGCGCTGCGGTTTTTGATTTCTAAAGAATTAGTTGATTCAAGATGCAGAACGAAGAGGGAAAAATCACGGAG
CTTTATATTCCCAGAAAATGCTCCGCCACGAATCGGCTGATTACTTCCAAGGATCATGCTTCGGTTCAGATAAACATTGGGCATTTGGATGAGAATGGCATCTACACTGG
CCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCGCAGGTGATTGTTATTTATCTATCTGTCTCTGTTTTTGGATTTGGAGATGCTGACAGCGCACTGGATCGGC
TCTGGCACAAGAAGAAAGTCGAAGTTCATCAACAATAGATGATTGTGCTGGTCCGGTTCAGCTCTACATCAACGTTTTCAAGGATAGAGATGCACTTTTAAAAATTTTGA
ACCTATTAAACTCGTTAGTTTCTTTTGACAATTTAAACTCGTTAGTTTCTTTCAATGCAAACTTGACTGCACCCGAGTCGGTACAAGCTTTGGTGGGTGAAAAAGGGACA
GAACTAAGGTGAATGAGATATGTTGAATTTCATTTTCCATTGAAAGGAATTACCAAAGTGAGCTTCTATATGGCCTCATGTTTTGTTGATATGATAGGATGCCTTTAAGC
TTCCGATAGGTTGTCCTTGGAGATGTTGTTAATAATGAGAAAAGAAAACGAGAACTAGTTACACATTTTCCATGGTAGCTCATTTGTTTTTCTAGTGTCTACTTAGGTTA
GCATCTAAGAGTTCTTATTGTGTCTAGTTTTTTCAGAATGAAATGCAAGGGATTTGTTAGTCGAA
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVIVIYLSVSVFGFGDADSALDRLWHKKKVEVHQQ