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CmoCh06G015080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G015080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr06:10778654..10781173
RNA-Seq ExpressionCmoCh06G015080
SyntenyCmoCh06G015080
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597532.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia]6.6e-44100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV

KAG7028990.1 Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]6.6e-44100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSV

XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.5e-43100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]2.3e-4198.91Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

XP_022973756.1 dynein light chain 1, cytoplasmic-like isoform X2 [Cucurbita maxima]4.4e-4098.89Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF

TrEMBL top hitse value%identityAlignment
A0A6J1C8U0 Dynein light chain4.9e-3783.7Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MN D+KR+NP+ LMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK++VEKDVAEQIK+EFDKRHGPTWHC++GRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1G0U9 Dynein light chain1.2e-43100Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1I9I2 Dynein light chain2.1e-4098.89Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNF

A0A6J1IC60 Dynein light chain1.1e-4198.91Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

A0A6J1IQ69 Dynein light chain6.4e-3786.96Show/hide
Query:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        MN +SKRSNP+PLMVKPESEDRK SS A   KKIVIKSADMFG MQKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHC++GRNFGS
Subjt:  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic4.9e-1861.9Show/hide
Query:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q3MHR3 Dynein light chain 2, cytoplasmic1.1e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q78P75 Dynein light chain 2, cytoplasmic1.1e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q96FJ2 Dynein light chain 2, cytoplasmic1.1e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Q9D0M5 Dynein light chain 2, cytoplasmic1.1e-1763.93Show/hide
Query:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGS
Subjt:  KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 119.0e-0742.62Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCVIGRNFG
        K +++ +DM   MQ +A+  A  A +   V   K +A  IKKEFD+R+G  W CV+G NFG
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCVIGRNFG

AT3G16120.1 Dynein light chain type 1 family protein4.4e-0640.98Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNFG
        K  ++  DM   MQ +A+ IA  + +   V     +A  IKKEFD+R+G  W CV+G NFG
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNFG

AT4G15930.1 Dynein light chain type 1 family protein9.5e-2566.67Show/hide
Query:  EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        +DR+ S     ++ P GK+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEFDK+HG TWHC++GRNFGS
Subjt:  EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS

AT4G27360.1 Dynein light chain type 1 family protein1.3e-0537.1Show/hide
Query:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNFGS
        K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W C++G +FGS
Subjt:  KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNFGS

AT5G20110.1 Dynein light chain type 1 family protein1.4e-0748.33Show/hide
Query:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
        I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHC++G +FGS
Subjt:  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAA
GAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGT
TCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTTCCTATGTGA
mRNA sequenceShow/hide mRNA sequence
AGAAGAGACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCTTCCTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACAC
GGACCAACGAAAACCTCCCCGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCT
CCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGA
TGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTTCCTATGTGACACATGAAACCAACCA
TTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATAATTGTTCTTCCCTTGGCAAGCCTGCAATCACAATGCTACGATAAGTTCTTGTA
TGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGAAATTCAATCTGCCATTACATAAATCTCTCA
AAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGAGGGGATGCTTGTTTTTAATGGGTTTTTGGTGGTTAAACTTTCAATTATTGGCTCTGA
AATAAGCCCTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTGTACTATTGCTAAAGAAAAGGAAG
Protein sequenceShow/hide protein sequence
MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVPM