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CmoCh06G015210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G015210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionacyl-CoA dehydrogenase-related
Genome locationCmo_Chr06:10820760..10821874
RNA-Seq ExpressionCmoCh06G015210
SyntenyCmoCh06G015210
Gene Ontology termsGO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors (molecular function)
GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domainsIPR006091 - Acyl-CoA oxidase/dehydrogenase, central domain
IPR009100 - Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily
IPR037069 - Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582199.1 putative acyl-CoA dehydrogenase IBR3, partial [Cucurbita argyrosperma subsp. sororia]5.2e-5191.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G ++VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

KAG6597543.1 putative pectinesterase/pectinesterase inhibitor 21, partial [Cucurbita argyrosperma subsp. sororia]2.9e-5497.2Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
          ATAAM
Subjt:  TVATAAM

XP_022955811.1 probable acyl-CoA dehydrogenase IBR3 [Cucurbita moschata]5.2e-5191.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G ++VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

XP_022979708.1 probable acyl-CoA dehydrogenase IBR3 [Cucurbita maxima]1.2e-5091.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G  +VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

XP_023527506.1 probable acyl-CoA dehydrogenase IBR3 [Cucurbita pepo subsp. pepo]5.2e-5191.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G ++VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

TrEMBL top hitse value%identityAlignment
A0A0A0L5U9 Uncharacterized protein2.1e-5090.65Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSI R+G +FVIN RKWWTSGAMDPRCKILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TA +
Subjt:  TVATAAM

A0A218WEE6 probable acyl-CoA dehydrogenase IBR34.7e-5087.74Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRS+WAPQ+FNCGAPDTGN EVLLRYGNK+QLHEWL+PLL+GKIRSGFAMTEPQVASSDATNIECSIKR+G S+VIN RKWWTSGAMDPRCK+LIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAA
        T  TAA
Subjt:  TVATAA

A0A6J1C8N7 probable acyl-CoA dehydrogenase IBR32.8e-5089.72Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G +FVIN +KWWTSGA+DPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T   AAM
Subjt:  TVATAAM

A0A6J1GUW2 probable acyl-CoA dehydrogenase IBR32.5e-5191.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G ++VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

A0A6J1IX24 probable acyl-CoA dehydrogenase IBR35.6e-5191.59Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRSIWAPQVFNCGAPDTGN EVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKR+G  +VIN RKWWTSGAMDPRC+ILIVMGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  TVATAAM
        T  TAAM
Subjt:  TVATAAM

SwissProt top hitse value%identityAlignment
Q5ZHT1 Acyl-CoA dehydrogenase family member 114.9e-3665.71Show/hide
Query:  GRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGKT
        G+  +AP+VFNC APDTGN EVL  YG ++Q  EWL PLLEGKI S F MTEP VASSDATN++CSI+RDG S+VIN +KWW+SGA +P CK+ IVMGKT
Subjt:  GRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGKT

Query:  VATAA
          ++A
Subjt:  VATAA

Q6JQN1 Acyl-CoA dehydrogenase family member 101.2e-3464.36Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MG S++AP+V NC APDTGN E+L+RYG + Q   WLIPLLEGK RS FAMTEPQVASSDATNIE SI+ +   +VIN  KWW +G +DPRC++ + MGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  T
        T
Subjt:  T

Q709F0 Acyl-CoA dehydrogenase family member 116.0e-3463.46Show/hide
Query:  GRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGKT
        G+  +AP VFNC APDTGN EVL  YG+++Q  +WL PLL+G I S F MTEP VASSDATNIECSI+RD  S+VIN +KWW+SGA +P+CKI IV+G+T
Subjt:  GRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGKT

Query:  VATA
          T+
Subjt:  VATA

Q8K370 Acyl-CoA dehydrogenase family member 101.3e-3665.35Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MG S++A ++FNC APDTGN E+L+RYG ++Q   WL+PLLEG+IRS FAMTEPQVASSDA+NIE SIK +   +VIN  KWWTSG +DPRCK+ + MGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  T
        T
Subjt:  T

Q8RWZ3 Probable acyl-CoA dehydrogenase IBR31.1e-4884.16Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRS+WAPQVFNCGAPDTGN EV+LRYGNK+Q+ EWLIPLLEG+IRSGFAMTEPQVASSDATNIECSI+R G S+VIN  KWWTSGAMDPRC++LI+MGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  T
        T
Subjt:  T

Arabidopsis top hitse value%identityAlignment
AT3G06810.1 acyl-CoA dehydrogenase-related8.0e-5084.16Show/hide
Query:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK
        MGRS+WAPQVFNCGAPDTGN EV+LRYGNK+Q+ EWLIPLLEG+IRSGFAMTEPQVASSDATNIECSI+R G S+VIN  KWWTSGAMDPRC++LI+MGK
Subjt:  MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGK

Query:  T
        T
Subjt:  T


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGGTCTATTTGGGCTCCTCAGGTGTTTAACTGTGGTGCACCTGACACTGGAAATAAGGAGGTATTGTTGCGGTATGGCAATAAACAACAACTACATGAATGGCT
TATTCCTTTACTTGAAGGAAAGATACGGTCGGGATTTGCAATGACTGAACCACAAGTTGCATCCTCTGATGCAACAAATATTGAATGTTCAATCAAAAGGGATGGATACT
CCTTTGTCATCAATCGAAGAAAATGGTGGACAAGTGGAGCCATGGATCCGAGGTGCAAAATCCTTATAGTTATGGGAAAAACAGTTGCTACTGCTGCTATGCTTCTCTCC
ATTATTTGCAGGGAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGGTCTATTTGGGCTCCTCAGGTGTTTAACTGTGGTGCACCTGACACTGGAAATAAGGAGGTATTGTTGCGGTATGGCAATAAACAACAACTACATGAATGGCT
TATTCCTTTACTTGAAGGAAAGATACGGTCGGGATTTGCAATGACTGAACCACAAGTTGCATCCTCTGATGCAACAAATATTGAATGTTCAATCAAAAGGGATGGATACT
CCTTTGTCATCAATCGAAGAAAATGGTGGACAAGTGGAGCCATGGATCCGAGGTGCAAAATCCTTATAGTTATGGGAAAAACAGTTGCTACTGCTGCTATGCTTCTCTCC
ATTATTTGCAGGGAAAAATAG
Protein sequenceShow/hide protein sequence
MGRSIWAPQVFNCGAPDTGNKEVLLRYGNKQQLHEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIKRDGYSFVINRRKWWTSGAMDPRCKILIVMGKTVATAAMLLS
IICREK