; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G015280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G015280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationCmo_Chr06:10838491..10840204
RNA-Seq ExpressionCmoCh06G015280
SyntenyCmoCh06G015280
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0071702 - organic substance transport (biological process)
GO:0071705 - nitrogen compound transport (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACL54615.1 unknown [Zea mays]2.7e-1552.69Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV
        WY QDQ +LS + SS+SE +L  VV ATT++ AW TL+RM++SS+R R  QIR++LAT +K D +A  Y RK+K LA  LAA G  L+D  F+
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV

ACN32036.1 unknown [Zea mays]9.2e-1653.76Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV
        WY QDQ +LS + SS+SE +L  VV ATT++ AW TL+RM++SS+RAR  QIR++LAT +K D +A  Y RK+K LA  LAA G  L+D  F+
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV

KAG8084596.1 hypothetical protein GUJ93_ZPchr0010g7974 [Zizania palustris]5.4e-2463.27Show/hide
Query:  WHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW
        + +WYD DQQ+LSGLLSSM+E +L DV  ATT+KEAWD LQR F+SSTRAR  QIRVELAT KKRD SAT+Y  K++GLA +LA AG+ L+D   + +
Subjt:  WHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW

WP_161403934.1 hypothetical protein, partial [Salmonella sp. hn-f5]1.6e-1575.81Show/hide
Query:  QWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKK
        +W DQDQ +LSGLLS+M+E +L D+++A TSKEAWD LQRMFSSSTRART QIRVELATTKK
Subjt:  QWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKK

XP_007131601.1 hypothetical protein PHAVU_011G027000g, partial [Phaseolus vulgaris]6.6e-1446.32Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW
        WY QDQ +LS + SS++E +L+ VV  TT++EAW TL+R F+S++RAR  QIR+EL+  +K+D +  NY RK+K L   LAA G  ++D   + +
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW

TrEMBL top hitse value%identityAlignment
A0A2N9HBX8 Uncharacterized protein5.4e-1449.04Show/hide
Query:  ASDFSFVIWHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQD
        ASD     +  W+ QDQ I+S L+SS+SE IL  +V   TS+E W TL+RMF+S +RART QI  +LAT KK D S  +Y  K  GLA  LAA    L D
Subjt:  ASDFSFVIWHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQD

Query:  GSFV
           V
Subjt:  GSFV

A0A2N9HJG0 Reverse transcriptase Ty1/copia-type domain-containing protein1.9e-1448.15Show/hide
Query:  LSLDASDFSFVIWHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGS
        +S  ASD     +  W+ QDQ I+S L+SS+SE IL  +V  +TS+E W TL+RMF+S +RART QI  +LAT KK D S  +Y  K  GLA  LAA   
Subjt:  LSLDASDFSFVIWHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGS

Query:  ALQDGSFV
         L D   V
Subjt:  ALQDGSFV

B8A366 Uncharacterized protein1.3e-1552.69Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV
        WY QDQ +LS + SS+SE +L  VV ATT++ AW TL+RM++SS+R R  QIR++LAT +K D +A  Y RK+K LA  LAA G  L+D  F+
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV

C0PCZ1 Uncharacterized protein4.4e-1653.76Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV
        WY QDQ +LS + SS+SE +L  VV ATT++ AW TL+RM++SS+RAR  QIR++LAT +K D +A  Y RK+K LA  LAA G  L+D  F+
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFV

V7AEB4 Uncharacterized protein (Fragment)3.2e-1446.32Show/hide
Query:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW
        WY QDQ +LS + SS++E +L+ VV  TT++EAW TL+R F+S++RAR  QIR+EL+  +K+D +  NY RK+K L   LAA G  ++D   + +
Subjt:  WYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKRDQSATNYVRKIKGLATELAAAGSALQDGSFVIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGGATGCGCGTCTCTTGAGGGACGCCAATTTGCTTGTCATGAGGTATATAATTATTAAGCACCTGACTATCTTTTGTCATAATGCTCATCTTGATGACGTCTT
CCGTCAGCTTGGAGACAAGTTCGAGTGGATTCTTCTAACTTCTCTTTTGTCATGTGGCACCACAACTCTTGACTTGTTGTTGGATCTTGCTGACGTCTTCCGTCAGCTTG
TTGACAAGTTCGAGTGGATGCTTCTAACTTCTCTTTTATCATATGACACCATGACTCTTGACCAATCATATGGCACCACGACTCTTGATTTGTTGTTGGATCTTACAGAT
GTCTTCCGTCAGCTTGGAGACAAGTTCGAGTGGATGCTTCTGACTTCTCTTTTGTCATATGGTACCACGACTCATGACTTGGTCAGTTGTTGGGTGAACTTGTCTCTCGA
TGCTTCTGATTTCTCTTTTGTCATATGGCACCAGTGGTATGATCAGGATCAACAGATCCTTAGCGGCCTTCTCTCCTCCATGTCCGAGGGGATTCTTCACGATGTGGTTG
CCGCTACTACGTCCAAGGAGGCGTGGGATACCCTGCAGCGGATGTTTTCGTCATCAACTCGTGCTCGCACTACTCAGATTCGTGTTGAGCTCGCCACGACCAAGAAACGA
GATCAATCTGCTACAAATTATGTTCGCAAGATCAAAGGGCTGGCCACCGAGCTGGCCGCCGCCGGCTCTGCCTTGCAGGATGGATCTTTTGTCATATGGCACCACGTTTG
A
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGGATGCGCGTCTCTTGAGGGACGCCAATTTGCTTGTCATGAGGTATATAATTATTAAGCACCTGACTATCTTTTGTCATAATGCTCATCTTGATGACGTCTT
CCGTCAGCTTGGAGACAAGTTCGAGTGGATTCTTCTAACTTCTCTTTTGTCATGTGGCACCACAACTCTTGACTTGTTGTTGGATCTTGCTGACGTCTTCCGTCAGCTTG
TTGACAAGTTCGAGTGGATGCTTCTAACTTCTCTTTTATCATATGACACCATGACTCTTGACCAATCATATGGCACCACGACTCTTGATTTGTTGTTGGATCTTACAGAT
GTCTTCCGTCAGCTTGGAGACAAGTTCGAGTGGATGCTTCTGACTTCTCTTTTGTCATATGGTACCACGACTCATGACTTGGTCAGTTGTTGGGTGAACTTGTCTCTCGA
TGCTTCTGATTTCTCTTTTGTCATATGGCACCAGTGGTATGATCAGGATCAACAGATCCTTAGCGGCCTTCTCTCCTCCATGTCCGAGGGGATTCTTCACGATGTGGTTG
CCGCTACTACGTCCAAGGAGGCGTGGGATACCCTGCAGCGGATGTTTTCGTCATCAACTCGTGCTCGCACTACTCAGATTCGTGTTGAGCTCGCCACGACCAAGAAACGA
GATCAATCTGCTACAAATTATGTTCGCAAGATCAAAGGGCTGGCCACCGAGCTGGCCGCCGCCGGCTCTGCCTTGCAGGATGGATCTTTTGTCATATGGCACCACGTTTG
A
Protein sequenceShow/hide protein sequence
MWSDARLLRDANLLVMRYIIIKHLTIFCHNAHLDDVFRQLGDKFEWILLTSLLSCGTTTLDLLLDLADVFRQLVDKFEWMLLTSLLSYDTMTLDQSYGTTTLDLLLDLTD
VFRQLGDKFEWMLLTSLLSYGTTTHDLVSCWVNLSLDASDFSFVIWHQWYDQDQQILSGLLSSMSEGILHDVVAATTSKEAWDTLQRMFSSSTRARTTQIRVELATTKKR
DQSATNYVRKIKGLATELAAAGSALQDGSFVIWHHV